LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011401
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023587
Biotype: transcript isomorph
Gene id: XLOC_011401
Gene Name: XLOC_011401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-236
0.024
0
7mer
381-401
0.019
0
AC005618.6
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606674
Biotype: lincRNA
Gene id: ENSG00000272070
Gene Name: AC005618.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-408
0.043
1
RP11-168O16.1
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446333
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
960-979
0.026
1
7mer
433-456
0.017
4
KB-1836B5.1
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000563059
Biotype: sense_overlapping
Gene id: ENSG00000260949
Gene Name: KB-1836B5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-165
0.039
Not Conserved
6mer
687-703
0.004
2
HAND2-AS1
hsa-miR-4677-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2325-2348
0.038
10
6mer
183-202
0.005
1
CTC-1337H24.3
hsa-miR-4677-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000613900
Biotype: lincRNA
Gene id: ENSG00000274251
Gene Name: CTC-1337H24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-266
0.042
8
RP11-374M1.2
hsa-miR-4677-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
773-794
0.039
1
6mer
277-288
0.003
Not Conserved
RP11-100M12.3
hsa-miR-4677-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557170
Biotype: antisense
Gene id: ENSG00000259168
Gene Name: RP11-100M12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-56
0.037
4
7mer
488-497
0.004
0
6mer
600-617
0.002
1
RP11-734K21.5
hsa-miR-4677-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565044
Biotype: lincRNA
Gene id: ENSG00000261104
Gene Name: RP11-734K21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
3145-3166
0.009
1
6mer
3002-3012
0.006
1
8mer
615-639
0.006
0
8mer
1881-1907
0.004
0
7mer
1519-1545
0.004
1
6mer
2433-2438
0.004
1
6mer
7-31
0.004
1
6mer
989-1003
0.002
0
6mer
2161-2175
0.001
0
AC024560.2
hsa-miR-4677-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424493
Biotype: lincRNA
Gene id: ENSG00000236833
Gene Name: AC024560.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
841-846
0.023
0
6mer
748-763
0.007
0
6mer
629-652
0.006
0
7mer
1200-1213
0.006
Not Conserved
RP11-361D14.2
hsa-miR-4677-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000568324
Biotype: lincRNA
Gene id: ENSG00000261129
Gene Name: RP11-361D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1686-1703
0.021
1
7mer
826-831
0.007
1
6mer
80-99
0.006
1
6mer
2929-2933
0.004
0
6mer
2080-2099
0.002
1
6mer
1387-1402
0.001
1
6mer
1742-1765
0.001
1
MUC19
hsa-miR-4677-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000424466
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-110
0.018
Not Conserved
6mer
260-272
0.008
3
6mer
31-56
0.006
2
6mer
608-626
0.004
0
6mer
137-164
0.004
1
6mer
645-671
0.002
0
MORC2-AS1
hsa-miR-4677-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000422995
Biotype: antisense
Gene id: ENSG00000235989
Gene Name: MORC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2206-2220
0.032
6
6mer
359-376
0.004
3
6mer
1692-1710
0.003
1
6mer
1218-1238
0.002
0
6mer
1370-1387
0.001
1
XLOC_009405
hsa-miR-4677-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019603
Biotype: transcript isomorph
Gene id: XLOC_009405
Gene Name: XLOC_009405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-265
0.042
3
AC011525.2
hsa-miR-4677-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562167
Biotype: lincRNA
Gene id: ENSG00000261400
Gene Name: AC011525.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5102-5126
0.017
2
8mer
1142-1155
0.010
1
6mer
4628-4650
0.005
9
6mer
284-304
0.005
1
6mer
5263-5284
0.004
4
6mer
2455-2477
0.001
3
6mer
2428-2440
0.001
1
RP11-263K19.4
hsa-miR-4677-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436772
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-436
0.015
1
6mer
541-566
0.011
10
6mer
486-497
0.009
10
7mer
379-386
0.007
Not Conserved
RP1-80N2.2
hsa-miR-4677-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432823
Biotype: lincRNA
Gene id: ENSG00000226281
Gene Name: RP1-80N2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
427-447
0.042
0
FLJ42969
hsa-miR-4677-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514926
Biotype: lincRNA
Gene id: ENSG00000248599
Gene Name: FLJ42969
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1561-1582
0.024
1
7mer
27-38
0.010
3
6mer
1823-1827
0.006
1
6mer
641-662
0.002
1
XLOC_008106
hsa-miR-4677-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1825-1841
0.040
1
6mer
984-1003
0.002
Not Conserved
RP11-96A15.1
hsa-miR-4677-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613388
Biotype: lincRNA
Gene id: ENSG00000278464
Gene Name: RP11-96A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-260
0.020
1
8mer
304-321
0.018
0
6mer
369-380
0.004
1
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