LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
RP3-412A9.17
hsa-miR-4677-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7835-7857
0.015
1
7mer
10664-10671
0.007
5
7mer
13482-13501
0.007
1
7mer
5393-5414
0.004
1
6mer
3914-3918
0.002
1
6mer
3290-3308
0.002
1
6mer
2130-2134
0.002
1
6mer
15176-15195
0.002
1
6mer
8223-8240
0.001
1
6mer
12049-12056
0.001
0
6mer
2743-2759
0.001
0
6mer
2145-2165
0.001
1
PRR26
hsa-miR-4677-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027152.2
Biotype: sense
Gene id: NR_027152.2 (gene)
Gene Name: PRR26
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2541-2558
0.039
2
6mer
1182-1205
0.002
2
6mer
1865-1884
0.002
0
LINC00402
hsa-miR-4677-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000419499
Biotype: lincRNA
Gene id: ENSG00000235532
Gene Name: LINC00402
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2491-2503
0.016
5
7mer
2875-2895
0.012
1
7mer
2614-2619
0.006
1
6mer
2879-2883
0.005
5
6mer
2763-2790
0.004
1
XLOC_007736
hsa-miR-4677-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016356
Biotype: transcript isomorph
Gene id: XLOC_007736
Gene Name: XLOC_007736
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
93-115
0.043
1
LINC00901
hsa-miR-4677-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487512
Biotype: antisense
Gene id: ENSG00000242385
Gene Name: LINC00901
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1438-1450
0.041
3
6mer
780-799
0.002
0
XLOC_006809
hsa-miR-4677-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014492
Biotype: transcript isomorph
Gene id: XLOC_006809
Gene Name: XLOC_006809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1605-1623
0.015
0
7mer
2399-2406
0.014
1
6mer
23-42
0.005
0
6mer
1780-1806
0.004
2
6mer
1953-1963
0.004
1
RP11-87C12.5
hsa-miR-4677-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538710
Biotype: lincRNA
Gene id: ENSG00000255856
Gene Name: RP11-87C12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
745-752
0.043
0
RP11-206L10.9
hsa-miR-4677-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434264
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
822-836
0.021
Not Conserved
8mer
368-374
0.018
Not Conserved
6mer
666-670
0.004
Not Conserved
RP11-77G23.2
hsa-miR-4677-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413431
Biotype: antisense
Gene id: ENSG00000234149
Gene Name: RP11-77G23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-138
0.043
5
RP4-545K15.5
hsa-miR-4677-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000564612
Biotype: sense_overlapping
Gene id: ENSG00000261101
Gene Name: RP4-545K15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-33
0.037
1
6mer
543-567
0.005
0
AC007743.1
hsa-miR-4677-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447423
Biotype: antisense
Gene id: ENSG00000233251
Gene Name: AC007743.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1219-1245
0.017
2
8mer
1227-1245
0.013
1
7mer
615-620
0.009
1
6mer
228-253
0.004
3
CTD-2339F6.1
hsa-miR-4677-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518934
Biotype: lincRNA
Gene id: ENSG00000254139
Gene Name: CTD-2339F6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1605-1623
0.015
0
7mer
2399-2406
0.014
1
6mer
23-42
0.005
0
6mer
1780-1806
0.004
2
6mer
1953-1963
0.004
1
XLOC_003730
hsa-miR-4677-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008287
Biotype: transcript isomorph
Gene id: XLOC_003730
Gene Name: XLOC_003730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-379
0.043
1
HAND2-AS1
hsa-miR-4677-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2322-2345
0.038
10
6mer
174-199
0.005
1
RP11-506B6.6
hsa-miR-4677-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590584
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-604
0.036
2
6mer
640-654
0.007
5
STARD13-AS
hsa-miR-4677-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609995
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-332
0.033
1
6mer
720-744
0.005
0
6mer
600-618
0.005
1
RP11-15J22.8
hsa-miR-4677-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619123
Biotype: lincRNA
Gene id: ENSG00000275265
Gene Name: RP11-15J22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
357-366
0.043
1
RP11-388C12.1
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574471
Biotype: lincRNA
Gene id: ENSG00000263063
Gene Name: RP11-388C12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
653-676
0.043
1
RP11-87C12.5
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616576
Biotype: lincRNA
Gene id: ENSG00000255856
Gene Name: RP11-87C12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
522-529
0.043
0
RP11-168O16.1
hsa-miR-4677-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458003
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
957-976
0.026
1
7mer
430-453
0.017
4
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