LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
SPACA6P-AS
hsa-miR-4677-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602324
Biotype: lincRNA
Gene id: ENSG00000269959
Gene Name: SPACA6P-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3792-3806
0.017
6
6mer
3173-3182
0.004
6
6mer
3699-3722
0.004
2
6mer
3643-3647
0.003
0
6mer
3566-3570
0.003
1
6mer
3557-3562
0.003
1
6mer
769-793
0.003
3
7mer
3128-3138
0.003
3
6mer
1429-1443
0.002
1
6mer
1081-1094
0.002
1
RP11-674N23.4
hsa-miR-4677-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609424
Biotype: sense_intronic
Gene id: ENSG00000272788
Gene Name: RP11-674N23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
457-473
0.044
3
XLOC_007590
hsa-miR-4677-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016200
Biotype: transcript isomorph
Gene id: XLOC_007590
Gene Name: XLOC_007590
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-150
0.036
1
6mer
125-132
0.004
1
6mer
204-224
0.004
1
RP11-757G1.6
hsa-miR-4677-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-194
0.044
0
XLOC_006664
hsa-miR-4677-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014020
Biotype: transcript isomorph
Gene id: XLOC_006664
Gene Name: XLOC_006664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-411
0.030
2
7mer
173-198
0.014
0
RP11-45K10.2
hsa-miR-4677-3p
0.883
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518739
Biotype: lincRNA
Gene id: ENSG00000253894
Gene Name: RP11-45K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
687-705
0.033
3
7mer
1844-1866
0.005
Not Conserved
6mer
466-480
0.003
1
6mer
2359-2371
0.003
Not Conserved
RP3-453C12.15
hsa-miR-4677-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617473
Biotype: lincRNA
Gene id: ENSG00000277022
Gene Name: RP3-453C12.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
470-486
0.031
1
8mer+wobble
1384-1400
0.011
4
6mer
1024-1034
0.002
2
RP11-731J8.2
hsa-miR-4677-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000562284
Biotype: sense_overlapping
Gene id: ENSG00000260918
Gene Name: RP11-731J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
50-66
0.021
4
8mer
6156-6165
0.021
1
6mer
1146-1156
0.002
1
MESTIT1
hsa-miR-4677-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_004382.1
Biotype: antisense
Gene id: NR_004382.1 (gene)
Gene Name: MESTIT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1759-1774
0.028
3
8mer
1554-1570
0.008
1
7mer
1587-1601
0.003
2
6mer
1028-1046
0.002
0
6mer
2072-2082
0.002
1
LOC100190986
hsa-miR-4677-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024456.1
Biotype: sense
Gene id: NR_024456.1 (gene)
Gene Name: LOC100190986
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1904-1923
0.026
0
7mer
1045-1051
0.018
0
XLOC_003061
hsa-miR-4677-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007127
Biotype: transcript isomorph
Gene id: XLOC_003061
Gene Name: XLOC_003061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6744-6759
0.017
1
7mer
645-659
0.010
3
7mer
2184-2190
0.005
2
7mer
6063-6072
0.005
1
6mer
309-323
0.003
0
6mer
4129-4145
0.002
0
6mer
5703-5720
0.001
1
6mer
3044-3070
0.001
0
RP11-1151B14.1
hsa-miR-4677-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622635
Biotype: lincRNA
Gene id: ENSG00000276403
Gene Name: RP11-1151B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
240-263
0.044
1
RGS5
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439699
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1110-1134
0.030
2
7mer
298-323
0.014
1
RP4-607I7.1
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528366
Biotype: antisense
Gene id: ENSG00000255521
Gene Name: RP4-607I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-146
0.024
1
8mer
58-82
0.016
0
6mer
835-857
0.004
1
XLOC_008033
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017441
Biotype: transcript isomorph
Gene id: XLOC_008033
Gene Name: XLOC_008033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
291-318
0.033
0
6mer
725-733
0.006
1
6mer
1997-2011
0.003
0
6mer
1648-1671
0.002
0
LIPE-AS1
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594624
Biotype: antisense
Gene id: ENSG00000213904
Gene Name: LIPE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1252-1258
0.037
1
6mer
1316-1328
0.004
1
6mer
582-603
0.002
0
XLOC_003211
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006604
Biotype: transcript isomorph
Gene id: XLOC_003211
Gene Name: XLOC_003211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-291
0.043
1
XLOC_007528
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016134
Biotype: transcript isomorph
Gene id: XLOC_007528
Gene Name: XLOC_007528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5517-5540
0.039
8
6mer
1683-1707
0.002
0
6mer
2088-2092
0.001
1
6mer
1930-1950
0.001
4
6mer
1839-1843
0.001
1
XLOC_004924
hsa-miR-4677-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4733-4757
0.013
5
7mer
10032-10059
0.008
2
8mer
9193-9212
0.007
1
7mer
2885-2891
0.006
1
6mer
4550-4572
0.003
6
6mer
9040-9066
0.002
6
6mer
5770-5792
0.002
1
7mer
9141-9164
0.002
0
6mer
7091-7111
0.001
1
6mer
2828-2853
0.001
0
XLOC_005501
hsa-miR-4677-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-157
0.018
0
6mer
1495-1506
0.012
1
7mer
887-897
0.008
0
6mer
318-342
0.005
0
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