LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
CTD-2553L13.10
hsa-miR-4677-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612269
Biotype: lincRNA
Gene id: ENSG00000274104
Gene Name: CTD-2553L13.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-403
0.042
1
6mer
215-236
0.004
0
PWRN1
hsa-miR-4677-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568609
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1210-1216
0.041
1
6mer
613-628
0.005
1
ZNF571-AS1
hsa-miR-4677-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585578
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2550-2556
0.032
2
7mer
1648-1655
0.007
0
7mer
2202-2216
0.004
1
6mer
250-268
0.002
1
XLOC_003063
hsa-miR-4677-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006453
Biotype: transcript isomorph
Gene id: XLOC_003063
Gene Name: XLOC_003063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-51
0.045
1
XLOC_002925
hsa-miR-4677-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006314
Biotype: transcript isomorph
Gene id: XLOC_002925
Gene Name: XLOC_002925
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-396
0.041
0
6mer
1293-1315
0.004
1
XLOC_007817
hsa-miR-4677-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015862
Biotype: transcript isomorph
Gene id: XLOC_007817
Gene Name: XLOC_007817
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-303
0.045
1
ZNF571-AS1
hsa-miR-4677-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_038247.1
Biotype: sense
Gene id: NR_038247.1 (gene)
Gene Name: ZNF571-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2548-2554
0.031
2
7mer
1646-1653
0.007
0
7mer
2200-2214
0.004
1
6mer
248-266
0.002
1
XLOC_012034
hsa-miR-4677-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024749
Biotype: transcript isomorph
Gene id: XLOC_012034
Gene Name: XLOC_012034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-549
0.028
0
6mer
1035-1039
0.006
1
6mer
835-862
0.006
1
6mer
589-594
0.005
1
CTD-2291D10.4
hsa-miR-4677-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600223
Biotype: lincRNA
Gene id: ENSG00000267886
Gene Name: CTD-2291D10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
90-100
0.045
0
XLOC_007993
hsa-miR-4677-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017181
Biotype: transcript isomorph
Gene id: XLOC_007993
Gene Name: XLOC_007993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
202-213
0.027
4
7mer
960-977
0.018
0
XLOC_013499
hsa-miR-4677-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028139
Biotype: transcript isomorph
Gene id: XLOC_013499
Gene Name: XLOC_013499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-90
0.045
0
RP13-991F5.2
hsa-miR-4677-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
755-759
0.017
0
6mer
743-748
0.014
0
6mer
763-787
0.013
0
RP11-374M1.2
hsa-miR-4677-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
654-675
0.041
1
6mer
88-99
0.004
Not Conserved
U47924.30
hsa-miR-4677-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000606112
Biotype: lincRNA
Gene id: ENSG00000272201
Gene Name: U47924.30
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
816-822
0.036
4
7mer
1073-1092
0.009
4
RP11-509A17.3
hsa-miR-4677-3p
0.887
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-63
0.030
1
6mer
162-176
0.014
1
RP4-639J15.3
hsa-miR-4677-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
997-1021
0.015
1
6mer
262-277
0.013
1
6mer
300-324
0.010
1
6mer
207-223
0.007
0
LINC00624
hsa-miR-4677-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619867
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
416-442
0.028
1
7mer
2062-2070
0.010
2
6mer
2415-2426
0.003
3
6mer
2328-2347
0.002
0
RP11-111F5.4
hsa-miR-4677-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000430302
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-99
0.044
0
PCBP1-AS1
hsa-miR-4677-3p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594376
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-180
0.018
1
7mer
1033-1051
0.015
0
7mer
79-92
0.012
2
STARD13-AS
hsa-miR-4677-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608496
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
263-269
0.034
1
6mer
657-681
0.005
0
6mer
537-555
0.004
1
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