LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
LINC00467
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026761.2
Biotype: lincRNA
Gene id: NR_026761.2 (gene)
Gene Name: LINC00467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-218
0.047
1
LINC00467
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448567
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-293
0.047
1
PAX8-AS1
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436293
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-510
0.037
Not Conserved
7mer
2205-2231
0.009
3
6mer
1621-1639
0.002
0
XLOC_008200
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017354
Biotype: transcript isomorph
Gene id: XLOC_008200
Gene Name: XLOC_008200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1032-1056
0.021
3
8mer
1011-1023
0.015
1
8mer
543-565
0.011
0
XLOC_007321
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015945
Biotype: transcript isomorph
Gene id: XLOC_007321
Gene Name: XLOC_007321
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
542-562
0.047
1
RP11-412P11.1
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506425
Biotype: lincRNA
Gene id: ENSG00000248837
Gene Name: RP11-412P11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
853-871
0.047
0
RP11-164C12.2
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556708
Biotype: lincRNA
Gene id: ENSG00000258909
Gene Name: RP11-164C12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-668
0.022
4
7mer
2141-2160
0.011
1
6mer
238-248
0.005
1
6mer
2070-2083
0.004
1
6mer
860-882
0.002
1
6mer
1865-1880
0.002
Not Conserved
XLOC_007880
hsa-miR-4677-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016890
Biotype: transcript isomorph
Gene id: XLOC_007880
Gene Name: XLOC_007880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-734
0.042
0
6mer
383-387
0.005
0
CTD-2020K17.3
hsa-miR-4677-3p
0.901
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587534
Biotype: antisense
Gene id: ENSG00000233175
Gene Name: CTD-2020K17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-164
0.039
1
6mer
248-267
0.005
3
6mer
1967-1980
0.003
1
CTC-559E9.4
hsa-miR-4677-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590274
Biotype: lincRNA
Gene id: ENSG00000267581
Gene Name: CTC-559E9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-215
0.031
Not Conserved
6mer
530-547
0.016
0
RP11-714M23.2
hsa-miR-4677-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620778
Biotype: lincRNA
Gene id: ENSG00000277837
Gene Name: RP11-714M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4629-4647
0.040
7
7mer
4123-4141
0.006
2
6mer
1391-1417
0.001
0
ZNF571-AS1
hsa-miR-4677-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590838
Biotype: antisense
Gene id: ENSG00000267470
Gene Name: ZNF571-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2284-2290
0.031
2
7mer
1382-1389
0.009
0
7mer
1936-1950
0.004
1
6mer
336-354
0.002
1
AC137932.6
hsa-miR-4677-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562995
Biotype: antisense
Gene id: ENSG00000261253
Gene Name: AC137932.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
416-442
0.039
1
7mer
164-189
0.004
Not Conserved
6mer
838-863
0.004
1
XLOC_008729
hsa-miR-4677-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017926
Biotype: transcript isomorph
Gene id: XLOC_008729
Gene Name: XLOC_008729
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-502
0.028
0
7mer
726-741
0.010
0
6mer
1045-1061
0.003
1
6mer
1251-1274
0.003
2
6mer
1004-1016
0.002
1
RP3-508I15.9
hsa-miR-4677-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000422408
Biotype: antisense
Gene id: ENSG00000228274
Gene Name: RP3-508I15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-276
0.046
5
XLOC_009695
hsa-miR-4677-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020365
Biotype: transcript isomorph
Gene id: XLOC_009695
Gene Name: XLOC_009695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1996-2003
0.028
1
7mer
1928-1943
0.008
0
7mer
835-847
0.008
1
6mer
452-470
0.003
0
C12orf80
hsa-miR-4677-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551332
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
516-540
0.026
1
9mer
384-405
0.020
1
RP11-525A16.4
hsa-miR-4677-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609514
Biotype: lincRNA
Gene id: ENSG00000273143
Gene Name: RP11-525A16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
134-141
0.029
2
8mer
323-345
0.017
1
XLOC_009322
hsa-miR-4677-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019527
Biotype: transcript isomorph
Gene id: XLOC_009322
Gene Name: XLOC_009322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
366-379
0.023
7
6mer
212-239
0.009
5
6mer
713-734
0.007
4
6mer
436-444
0.004
2
6mer
626-630
0.003
1
XLOC_009835
hsa-miR-4677-3p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020193
Biotype: transcript isomorph
Gene id: XLOC_009835
Gene Name: XLOC_009835
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1728-1734
0.027
1
6mer
704-727
0.005
5
7mer
740-757
0.005
1
6mer
17-39
0.003
0
6mer
1441-1459
0.002
1
6mer
1492-1496
0.002
1
6mer
972-995
0.002
Not Conserved
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