LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
PAX8-AS1
hsa-miR-4677-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000624706
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-305
0.048
Not Conserved
LINC00637
hsa-miR-4677-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556586
Biotype: lincRNA
Gene id: ENSG00000258735
Gene Name: LINC00637
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-79
0.041
3
6mer
129-143
0.004
0
6mer
272-288
0.003
1
XLOC_001499
hsa-miR-4677-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003711
Biotype: transcript isomorph
Gene id: XLOC_001499
Gene Name: XLOC_001499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-298
0.048
2
RP11-219J21.1
hsa-miR-4677-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517964
Biotype: lincRNA
Gene id: ENSG00000253100
Gene Name: RP11-219J21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
771-796
0.028
1
7mer
13-36
0.018
3
6mer
643-647
0.002
0
LINC00662
hsa-miR-4677-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000561521
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1531-1549
0.020
Not Conserved
8mer
635-651
0.017
Not Conserved
9mer
1185-1210
0.011
Not Conserved
SOX9-AS1
hsa-miR-4677-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000434703
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
47-63
0.022
0
7mer
2741-2747
0.010
2
7mer
2734-2741
0.010
3
6mer
333-355
0.004
2
6mer
1924-1949
0.002
1
XLOC_002108
hsa-miR-4677-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004266
Biotype: transcript isomorph
Gene id: XLOC_002108
Gene Name: XLOC_002108
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2596-2620
0.022
1
7mer
2706-2726
0.021
5
6mer
710-715
0.003
1
6mer
515-531
0.003
1
XLOC_003249
hsa-miR-4677-3p
0.908
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007264
Biotype: transcript isomorph
Gene id: XLOC_003249
Gene Name: XLOC_003249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
848-863
0.022
0
7mer
965-985
0.013
1
7mer
160-172
0.009
1
6mer
360-370
0.002
Not Conserved
6mer
628-642
0.002
0
CTC-498J12.3
hsa-miR-4677-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504129
Biotype: antisense
Gene id: ENSG00000248664
Gene Name: CTC-498J12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
330-345
0.028
7
6mer
58-62
0.013
10
6mer
294-313
0.007
9
AC005042.4
hsa-miR-4677-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000342892
Biotype: antisense
Gene id: ENSG00000204380
Gene Name: AC005042.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-16
0.021
2
7mer
189-211
0.019
3
7mer
697-717
0.004
0
7mer
2668-2683
0.003
2
XLOC_012370
hsa-miR-4677-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025543
Biotype: transcript isomorph
Gene id: XLOC_012370
Gene Name: XLOC_012370
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1402-1429
0.040
0
6mer
1284-1311
0.008
0
RP5-1173A5.1
hsa-miR-4677-3p
0.906
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526922
Biotype: antisense
Gene id: ENSG00000254592
Gene Name: RP5-1173A5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-742
0.042
0
6mer
403-410
0.006
0
XLOC_004474
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010040
Biotype: transcript isomorph
Gene id: XLOC_004474
Gene Name: XLOC_004474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
392-412
0.048
8
IBA57-AS1
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496552
Biotype: lincRNA
Gene id: ENSG00000203684
Gene Name: IBA57-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-403
0.039
1
6mer
419-423
0.008
1
RP11-693J15.4
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508671
Biotype: antisense
Gene id: ENSG00000266923
Gene Name: RP11-693J15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1675-1681
0.028
1
6mer
651-674
0.006
5
7mer
687-704
0.006
1
6mer
1388-1406
0.003
1
6mer
1439-1443
0.002
1
6mer
919-942
0.002
Not Conserved
GRIK1-AS2
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_033368.1
Biotype: sense
Gene id: NR_033368.1 (gene)
Gene Name: GRIK1-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
713-726
0.043
2
6mer
295-309
0.004
1
LINC00467
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423222
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
164-170
0.045
1
6mer
1859-1863
0.003
1
LINC00632
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000370535
Biotype: lincRNA
Gene id: ENSG00000203930
Gene Name: LINC00632
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-199
0.020
0
6mer
223-227
0.005
3
6mer
381-388
0.003
1
6mer
878-901
0.003
1
6mer
413-425
0.003
0
6mer
814-821
0.002
1
6mer
545-569
0.002
0
6mer
857-861
0.002
1
6mer
650-660
0.002
1
6mer
620-629
0.002
2
6mer
834-841
0.002
0
6mer
945-961
0.002
0
RP11-96A15.1
hsa-miR-4677-3p
0.905
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000619331
Biotype: lincRNA
Gene id: ENSG00000278464
Gene Name: RP11-96A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-265
0.023
0
8mer
181-204
0.020
1
6mer
313-324
0.004
1
C12orf80
hsa-miR-4677-3p
0.903
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551894
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
717-741
0.025
1
9mer
585-606
0.017
1
6mer
134-158
0.006
1
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