LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
XLOC_006331
hsa-miR-4677-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013672
Biotype: transcript isomorph
Gene id: XLOC_006331
Gene Name: XLOC_006331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-350
0.050
1
RP11-218M22.1
hsa-miR-4677-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537514
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1791-1804
0.027
2
7mer
222-237
0.018
3
6mer
2009-2030
0.005
0
RP11-848P1.2
hsa-miR-4677-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580979
Biotype: sense_intronic
Gene id: ENSG00000264456
Gene Name: RP11-848P1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1621-1627
0.047
0
6mer
351-376
0.003
0
LINC01091
hsa-miR-4677-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515769
Biotype: lincRNA
Gene id: ENSG00000249464
Gene Name: LINC01091
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2146-2158
0.021
1
7mer
446-468
0.013
1
7mer
592-616
0.011
1
6mer
12-39
0.005
0
RP11-15H20.6
hsa-miR-4677-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598386
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
467-479
0.019
1
6mer
117-137
0.014
1
6mer
179-199
0.010
1
6mer
236-262
0.007
0
XLOC_012056
hsa-miR-4677-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024780
Biotype: transcript isomorph
Gene id: XLOC_012056
Gene Name: XLOC_012056
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-552
0.045
0
6mer
19-44
0.005
0
RP11-978I15.10
hsa-miR-4677-3p
0.916
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446347
Biotype: antisense
Gene id: ENSG00000236817
Gene Name: RP11-978I15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
206-231
0.039
0
7mer
53-58
0.011
1
MEG3
hsa-miR-4677-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398460
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3269-3294
0.025
5
7mer
100-124
0.019
4
7mer
667-682
0.006
0
RALY-AS1
hsa-miR-4677-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000432859
Biotype: lincRNA
Gene id: ENSG00000228265
Gene Name: RALY-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-272
0.049
0
XLOC_010384
hsa-miR-4677-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021786
Biotype: transcript isomorph
Gene id: XLOC_010384
Gene Name: XLOC_010384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2093-2099
0.023
0
7mer
792-811
0.017
5
6mer
511-518
0.010
8
PAX8-AS1
hsa-miR-4677-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451179
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-180
0.046
Not Conserved
6mer
970-988
0.003
0
RP11-303E16.6
hsa-miR-4677-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563072
Biotype: antisense
Gene id: ENSG00000261838
Gene Name: RP11-303E16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-260
0.020
1
7mer
103-114
0.020
0
6mer
218-240
0.005
1
6mer
69-85
0.004
1
RP11-598D14.1
hsa-miR-4677-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506984
Biotype: lincRNA
Gene id: ENSG00000249945
Gene Name: RP11-598D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-211
0.039
0
8mer
234-253
0.010
Not Conserved
AC073628.1
hsa-miR-4677-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110286.1
Biotype: lincRNA
Gene id: NR_110286.1 (gene)
Gene Name: AC073628.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-135
0.045
1
6mer
264-269
0.004
1
AC073628.1
hsa-miR-4677-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443419
Biotype: lincRNA
Gene id: ENSG00000233605
Gene Name: AC073628.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-135
0.045
1
6mer
264-269
0.004
1
RP11-508N22.12
hsa-miR-4677-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3202-3222
0.027
1
6mer
230-234
0.008
1
7mer
4185-4190
0.005
0
6mer
5272-5297
0.003
1
6mer
2978-3004
0.003
1
6mer
5035-5041
0.003
0
RP1-257A15.1
hsa-miR-4677-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000433489
Biotype: antisense
Gene id: ENSG00000225437
Gene Name: RP1-257A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
506-517
0.049
1
AC090627.1
hsa-miR-4677-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581362
Biotype: antisense
Gene id: ENSG00000235300
Gene Name: AC090627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-836
0.049
1
RP11-269F20.1
hsa-miR-4677-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439849
Biotype: antisense
Gene id: ENSG00000236031
Gene Name: RP11-269F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
268-287
0.049
2
XLOC_012036
hsa-miR-4677-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024751
Biotype: transcript isomorph
Gene id: XLOC_012036
Gene Name: XLOC_012036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3-7
0.006
1
6mer
20-24
0.006
1
6mer
139-143
0.005
0
6mer
179-183
0.004
1
6mer
212-216
0.004
0
6mer
258-262
0.004
1
6mer
63-70
0.003
Not Conserved
6mer
293-297
0.003
1
6mer
301-305
0.003
0
6mer
397-401
0.003
Not Conserved
6mer
344-348
0.003
1
6mer
318-322
0.002
0
6mer
336-340
0.002
0
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