LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
PAX8-AS1
hsa-miR-4677-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445745
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-393
0.040
Not Conserved
7mer
2088-2114
0.010
3
6mer
1504-1522
0.002
0
LINC01140
hsa-miR-4677-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2109-2121
0.035
2
6mer
3086-3100
0.009
9
6mer
548-567
0.003
1
6mer
770-786
0.002
1
6mer
1375-1390
0.002
1
XLOC_002128
hsa-miR-4677-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005168
Biotype: transcript isomorph
Gene id: XLOC_002128
Gene Name: XLOC_002128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1254-1265
0.044
8
6mer
294-317
0.004
3
6mer
917-930
0.004
2
RP1-286D6.5
hsa-miR-4677-3p
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607459
Biotype: antisense
Gene id: ENSG00000272153
Gene Name: RP1-286D6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
152-176
0.049
5
6mer
185-207
0.003
1
RP11-218M22.1
hsa-miR-4677-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318291
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2110-2123
0.052
2
XLOC_000850
hsa-miR-4677-3p
0.924
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000528
Biotype: transcript isomorph
Gene id: XLOC_000850
Gene Name: XLOC_000850
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
579-597
0.034
2
7mer
256-278
0.017
2
LINC00662
hsa-miR-4677-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588150
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2-18
0.048
Not Conserved
6mer
394-411
0.003
Not Conserved
RP11-180N14.1
hsa-miR-4677-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000606582
Biotype: lincRNA
Gene id: ENSG00000272511
Gene Name: RP11-180N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-85
0.051
3
XLOC_009577
hsa-miR-4677-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019778
Biotype: transcript isomorph
Gene id: XLOC_009577
Gene Name: XLOC_009577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7190-7202
0.020
2
7mer
7791-7801
0.016
1
7mer
4781-4800
0.004
1
6mer
4264-4270
0.002
1
6mer
2609-2613
0.002
1
6mer
6615-6622
0.001
0
6mer
3541-3554
0.001
1
6mer
5139-5150
0.001
0
6mer
3856-3868
0.001
1
6mer
4676-4680
0.001
0
6mer
2543-2565
0.001
0
6mer
3809-3823
0.000
1
RP11-15J22.5
hsa-miR-4677-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610711
Biotype: lincRNA
Gene id: ENSG00000273970
Gene Name: RP11-15J22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-108
0.051
3
XLOC_007693
hsa-miR-4677-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015563
Biotype: transcript isomorph
Gene id: XLOC_007693
Gene Name: XLOC_007693
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1633-1655
0.002
Not Conserved
LINC00467
hsa-miR-4677-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000534914
Biotype: lincRNA
Gene id: ENSG00000153363
Gene Name: LINC00467
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-153
0.051
1
RP11-111F5.4
hsa-miR-4677-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412631
Biotype: lincRNA
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-103
0.039
0
6mer
227-242
0.012
0
LINC01140
hsa-miR-4677-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484933
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2296-2308
0.036
2
6mer
3273-3287
0.009
9
6mer
735-754
0.003
1
6mer
1562-1577
0.002
1
6mer
957-973
0.002
1
RP11-411K7.1
hsa-miR-4677-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-34
0.033
1
7mer
2880-2903
0.009
1
6mer
2324-2334
0.003
1
6mer
2151-2162
0.002
1
6mer
933-938
0.002
1
6mer
1629-1637
0.002
3
RP11-526F3.1
hsa-miR-4677-3p
0.920
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504004
Biotype: antisense
Gene id: ENSG00000251076
Gene Name: RP11-526F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-595
0.051
5
AF241725.4
hsa-miR-4677-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000428205
Biotype: lincRNA
Gene id: ENSG00000234730
Gene Name: AF241725.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-358
0.043
1
6mer
193-201
0.005
1
6mer
439-461
0.002
1
LINC01140
hsa-miR-4677-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000590653
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2243-2255
0.035
2
6mer
3220-3234
0.009
9
6mer
682-701
0.003
1
6mer
904-920
0.002
1
6mer
1509-1524
0.002
1
XLOC_008547
hsa-miR-4677-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018266
Biotype: transcript isomorph
Gene id: XLOC_008547
Gene Name: XLOC_008547
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-209
0.050
2
LINC01193
hsa-miR-4677-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557312
Biotype: lincRNA
Gene id: ENSG00000258710
Gene Name: LINC01193
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-361
0.050
3
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