LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4677-3p


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Gene
miRNA
Score
DIANA Links
CTD-2540L5.6
hsa-miR-4677-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500016
Biotype: lincRNA
Gene id: ENSG00000245466
Gene Name: CTD-2540L5.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2912-2931
0.032
6
7mer
2511-2533
0.019
2
6mer
1530-1549
0.001
1
6mer
731-752
0.001
1
7mer
1430-1436
0.001
0
CECR7
hsa-miR-4677-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414401
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-374
0.054
1
XLOC_010610
hsa-miR-4677-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022282
Biotype: transcript isomorph
Gene id: XLOC_010610
Gene Name: XLOC_010610
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
737-754
0.054
1
XLOC_011148
hsa-miR-4677-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022894
Biotype: transcript isomorph
Gene id: XLOC_011148
Gene Name: XLOC_011148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
509-527
0.054
1
LL22NC03-22D1.1
hsa-miR-4677-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-252
0.014
0
7mer
17034-17060
0.004
1
7mer
25718-25733
0.004
2
7mer
4673-4692
0.003
1
6mer
13640-13646
0.003
5
7mer
15322-15347
0.002
1
6mer
14139-14157
0.002
5
6mer
21569-21589
0.002
1
6mer
9667-9674
0.002
1
6mer
2862-2878
0.002
3
6mer
3614-3628
0.002
1
6mer
7925-7939
0.002
2
6mer
21842-21860
0.002
1
6mer
11275-11301
0.002
0
6mer
8545-8550
0.001
0
6mer
12857-12878
0.001
0
6mer
1155-1164
0.001
0
6mer
14560-14579
0.001
Not Conserved
6mer
12139-12160
0.001
0
6mer
15028-15040
0.001
0
6mer
21613-21633
0.001
1
6mer
14588-14592
0.000
0
STARD13-AS
hsa-miR-4677-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-326
0.033
1
6mer
1134-1155
0.005
3
6mer
1177-1181
0.005
1
6mer
960-984
0.004
1
6mer
594-612
0.003
1
6mer
714-738
0.003
0
CTD-2587M2.1
hsa-miR-4677-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512693
Biotype: lincRNA
Gene id: ENSG00000249476
Gene Name: CTD-2587M2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2866-2880
0.034
3
7mer
624-643
0.007
0
6mer
5012-5037
0.005
2
7mer
2679-2703
0.003
0
7mer
3618-3626
0.002
1
6mer
2194-2218
0.001
0
RP11-25B7.1
hsa-miR-4677-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449492
Biotype: antisense
Gene id: ENSG00000236390
Gene Name: RP11-25B7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-48
0.054
4
RP11-184E9.2
hsa-miR-4677-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562632
Biotype: lincRNA
Gene id: ENSG00000260761
Gene Name: RP11-184E9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-313
0.047
1
6mer
1440-1447
0.006
0
XLOC_010632
hsa-miR-4677-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022034
Biotype: transcript isomorph
Gene id: XLOC_010632
Gene Name: XLOC_010632
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
199-214
0.051
3
6mer
324-348
0.003
Not Conserved
INAFM2
hsa-miR-4677-3p
0.932
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560415
Biotype: antisense
Gene id: ENSG00000259330
Gene Name: INAFM2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-247
0.053
6
RP13-580B18.4
hsa-miR-4677-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000624628
Biotype: lincRNA
Gene id: ENSG00000279072
Gene Name: RP13-580B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
175-183
0.005
0
8mer
22999-23020
0.004
0
8mer
22296-22311
0.003
0
6mer
23986-24005
0.003
Not Conserved
7mer
20116-20138
0.003
0
7mer
22040-22050
0.003
0
7mer
22710-22720
0.003
0
7mer
19803-19817
0.002
0
7mer
19544-19554
0.002
0
7mer
3676-3690
0.002
0
7mer
21249-21269
0.002
0
7mer
12914-12928
0.002
0
6mer
24103-24125
0.002
Not Conserved
7mer
18967-18981
0.002
0
7mer
16503-16513
0.001
Not Conserved
7mer
1290-1304
0.001
Not Conserved
6mer
20787-20807
0.001
0
7mer
7208-7222
0.001
Not Conserved
7mer
14761-14771
0.001
Not Conserved
7mer
5418-5432
0.001
Not Conserved
7mer
21095-21114
0.001
0
7mer
18345-18359
0.001
Not Conserved
7mer
10932-10946
0.001
Not Conserved
7mer
15569-15576
0.001
Not Conserved
7mer
9094-9108
0.001
Not Conserved
7mer
17215-17229
0.001
Not Conserved
7mer
22585-22606
0.001
Not Conserved
7mer
21910-21932
0.001
Not Conserved
7mer
15473-15487
0.001
Not Conserved
AC105760.3
hsa-miR-4677-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000244820
Biotype: antisense
Gene id: ENSG00000124835
Gene Name: AC105760.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1863-1882
0.018
1
8mer
1433-1442
0.009
1
7mer
842-852
0.005
2
6mer
354-372
0.004
0
6mer
614-632
0.004
1
6mer
2062-2066
0.003
1
6mer
1138-1142
0.003
1
6mer
592-615
0.002
1
6mer
1856-1876
0.002
1
6mer
1080-1084
0.002
1
CTC-493L21.2
hsa-miR-4677-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507653
Biotype: lincRNA
Gene id: ENSG00000248701
Gene Name: CTC-493L21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-406
0.053
3
AC069257.8
hsa-miR-4677-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425275
Biotype: antisense
Gene id: ENSG00000228028
Gene Name: AC069257.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-402
0.053
2
DNM3OS
hsa-miR-4677-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417354
Biotype: antisense
Gene id: ENSG00000230630
Gene Name: DNM3OS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
702-708
0.032
1
6mer
4326-4336
0.012
10
6mer
2295-2299
0.003
12
6mer
3717-3721
0.003
1
6mer
3106-3128
0.002
1
RP11-96A15.1
hsa-miR-4677-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000619313
Biotype: lincRNA
Gene id: ENSG00000278464
Gene Name: RP11-96A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-267
0.027
1
8mer
311-328
0.021
0
6mer
376-387
0.005
1
STARD13-AS
hsa-miR-4677-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609061
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-205
0.035
1
6mer
837-858
0.006
3
6mer
880-884
0.005
1
6mer
372-390
0.004
1
6mer
492-516
0.003
0
DDR1-AS1
hsa-miR-4677-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000458361
Biotype: antisense
Gene id: ENSG00000237775
Gene Name: DDR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3629-3642
0.045
1
7mer
1658-1683
0.005
1
6mer
1498-1518
0.001
1
CELF2-AS1
hsa-miR-4677-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000379256
Biotype: antisense
Gene id: ENSG00000181800
Gene Name: CELF2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4677-3p
Sequence: ucugugagaccaaagaacuacu
MirBase ID: MIMAT0019761
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
704-730
0.037
Not Conserved
7mer
400-414
0.010
0
7mer
1723-1746
0.003
0
6mer
880-897
0.002
1
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