LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-455-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LOC550113
hsa-miR-455-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_046116.1
Biotype: antisense
Gene id: NR_046116.1 (gene)
Gene Name: LOC550113
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2716-2741
0.022
2
6mer
1732-1741
0.002
0
6mer
1560-1568
0.002
1
TSIX
hsa-miR-455-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36829-36846
0.009
1
8mer
11066-11092
0.005
0
6mer
34095-34110
0.003
2
6mer
26683-26698
0.002
1
6mer
2239-2250
0.002
1
6mer
20597-20615
0.002
3
6mer
15987-15999
0.001
Not Conserved
6mer
11019-11029
0.001
Not Conserved
LINC01007
hsa-miR-455-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437900
Biotype: lincRNA
Gene id: ENSG00000233123
Gene Name: LINC01007
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1456-1472
0.025
1
LINC00607
hsa-miR-455-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419922
Biotype: lincRNA
Gene id: ENSG00000235770
Gene Name: LINC00607
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-479
0.012
1
7mer
468-494
0.008
1
6mer
175-190
0.004
1
LINC00525
hsa-miR-455-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412730
Biotype: antisense
Gene id: ENSG00000146666
Gene Name: LINC00525
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
927-942
0.015
0
7mer
70-79
0.006
Not Conserved
6mer
620-633
0.003
0
XLOC_010336
hsa-miR-455-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021745
Biotype: transcript isomorph
Gene id: XLOC_010336
Gene Name: XLOC_010336
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-335
0.010
1
8mer
94-110
0.005
1
6mer
1091-1110
0.005
2
7mer
484-490
0.005
1
FLJ21408
hsa-miR-455-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000499939
Biotype: antisense
Gene id: ENSG00000245888
Gene Name: FLJ21408
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-335
0.025
0
PRSS51
hsa-miR-455-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521149
Biotype: antisense
Gene id: ENSG00000253649
Gene Name: PRSS51
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-224
0.025
4
XLOC_011680
hsa-miR-455-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024247
Biotype: transcript isomorph
Gene id: XLOC_011680
Gene Name: XLOC_011680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-335
0.025
0
LINC01002
hsa-miR-455-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622411
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-79
0.025
0
RP5-978I12.1
hsa-miR-455-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000562268
Biotype: lincRNA
Gene id: ENSG00000260951
Gene Name: RP5-978I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1243-1250
0.015
1
7mer
133-153
0.010
0
SYNPR-AS1
hsa-miR-455-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488201
Biotype: antisense
Gene id: ENSG00000241359
Gene Name: SYNPR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-230
0.021
Not Conserved
6mer
150-159
0.004
0
RP11-139J15.2
hsa-miR-455-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456217
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-315
0.025
3
CTD-3049M7.1
hsa-miR-455-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557481
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3199-3216
0.016
1
6mer
3228-3242
0.003
1
6mer
714-722
0.002
1
6mer
1474-1501
0.002
1
7mer
1237-1247
0.001
Not Conserved
RP11-500M8.4
hsa-miR-455-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544380
Biotype: sense_intronic
Gene id: ENSG00000256381
Gene Name: RP11-500M8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-268
0.025
1
AC015922.6
hsa-miR-455-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000418821
Biotype: lincRNA
Gene id: ENSG00000237057
Gene Name: AC015922.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
705-722
0.025
1
XLOC_003498
hsa-miR-455-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008035
Biotype: transcript isomorph
Gene id: XLOC_003498
Gene Name: XLOC_003498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-647
0.025
2
AC016747.3
hsa-miR-455-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420918
Biotype: lincRNA
Gene id: ENSG00000212978
Gene Name: AC016747.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2097-2107
0.009
2
6mer
2351-2370
0.008
1
7mer
677-702
0.008
1
RP1-288L1.4
hsa-miR-455-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000440858
Biotype: lincRNA
Gene id: ENSG00000237316
Gene Name: RP1-288L1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
397-409
0.025
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept