LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
SOX2-OT
hsa-miR-455-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497122
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-287
0.022
0
6mer
340-348
0.003
1
MKX-AS1
hsa-miR-455-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412244
Biotype: antisense
Gene id: ENSG00000230500
Gene Name: MKX-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
498-518
0.023
0
6mer
380-390
0.003
1
RP3-492J12.2
hsa-miR-455-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000610729
Biotype: lincRNA
Gene id: ENSG00000274961
Gene Name: RP3-492J12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-234
0.025
8
NR2F1-AS1
hsa-miR-455-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607797
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-339
0.018
0
6mer
2581-2594
0.003
2
7mer
2533-2549
0.002
1
6mer
2133-2153
0.002
2
RP11-182J1.5
hsa-miR-455-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000542197
Biotype: antisense
Gene id: ENSG00000256278
Gene Name: RP11-182J1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
601-608
0.025
0
RP11-466F5.10
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608512
Biotype: lincRNA
Gene id: ENSG00000273365
Gene Name: RP11-466F5.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-639
0.025
0
RP11-34P13.9
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000496488
Biotype: lincRNA
Gene id: ENSG00000241599
Gene Name: RP11-34P13.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
422-440
0.025
0
RP11-474D1.2
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535487
Biotype: lincRNA
Gene id: ENSG00000256906
Gene Name: RP11-474D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-124
0.013
0
7mer
1212-1221
0.009
1
6mer
41-52
0.002
0
6mer
228-237
0.001
Not Conserved
AC093642.3
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451070
Biotype: retained_intron
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
60-83
0.025
0
RP1-309I22.2
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
963-974
0.015
1
7mer
21834-21848
0.002
3
6mer
5279-5289
0.002
4
8mer+wobble
17764-17773
0.002
1
6mer
22342-22359
0.002
0
6mer
2605-2630
0.001
1
6mer
27360-27377
0.001
1
AC092415.1
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000356047
Biotype: lincRNA
Gene id: ENSG00000235493
Gene Name: AC092415.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
696-715
0.025
2
XLOC_005181
hsa-miR-455-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011701
Biotype: transcript isomorph
Gene id: XLOC_005181
Gene Name: XLOC_005181
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-100
0.023
1
6mer
460-476
0.002
Not Conserved
RP11-1D12.2
hsa-miR-455-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522106
Biotype: lincRNA
Gene id: ENSG00000254006
Gene Name: RP11-1D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-108
0.025
1
LINC01128
hsa-miR-455-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441765
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
603-614
0.025
1
RP1-30M3.5
hsa-miR-455-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607014
Biotype: antisense
Gene id: ENSG00000272345
Gene Name: RP1-30M3.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-124
0.025
0
XIST
hsa-miR-455-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10346-10363
0.011
4
7mer
13714-13723
0.007
2
7mer
7809-7827
0.004
4
7mer
5326-5351
0.003
1
6mer
6497-6507
0.001
0
SYNE1-AS1
hsa-miR-455-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412161
Biotype: antisense
Gene id: ENSG00000234577
Gene Name: SYNE1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-404
0.025
1
DYX1C1-CCPG1
hsa-miR-455-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568310
Biotype: processed_transcript
Gene id: ENSG00000261771
Gene Name: DYX1C1-CCPG1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-357
0.019
10
6mer
1236-1249
0.006
3
RP11-78O7.2
hsa-miR-455-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602353
Biotype: lincRNA
Gene id: ENSG00000270091
Gene Name: RP11-78O7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
172-184
0.025
0
HOXA-AS3
hsa-miR-455-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000521231
Biotype: antisense
Gene id: ENSG00000254369
Gene Name: HOXA-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-89
0.025
11
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