LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
SOX2-OT
hsa-miR-455-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460739
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-236
0.023
0
6mer
289-297
0.003
1
LOC388553
hsa-miR-455-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_038267.1
Biotype: sense
Gene id: NR_038267.1 (gene)
Gene Name: LOC388553
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-62
0.026
2
SOX2-OT
hsa-miR-455-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493521
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-241
0.023
0
6mer
294-302
0.003
1
XLOC_009269
hsa-miR-455-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019108
Biotype: transcript isomorph
Gene id: XLOC_009269
Gene Name: XLOC_009269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
808-821
0.026
1
XLOC_005397
hsa-miR-455-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011893
Biotype: transcript isomorph
Gene id: XLOC_005397
Gene Name: XLOC_005397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-601
0.026
1
XLOC_008106
hsa-miR-455-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-753
0.020
1
6mer
1856-1873
0.006
0
LINC00928
hsa-miR-455-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559967
Biotype: lincRNA
Gene id: ENSG00000259218
Gene Name: LINC00928
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-256
0.026
0
LINC00928
hsa-miR-455-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561201
Biotype: lincRNA
Gene id: ENSG00000259218
Gene Name: LINC00928
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-257
0.026
0
RP11-348F1.2
hsa-miR-455-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000455931
Biotype: lincRNA
Gene id: ENSG00000226530
Gene Name: RP11-348F1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
166-185
0.026
1
RP11-281P23.2
hsa-miR-455-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510639
Biotype: lincRNA
Gene id: ENSG00000249631
Gene Name: RP11-281P23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-202
0.026
0
XLOC_003874
hsa-miR-455-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008419
Biotype: transcript isomorph
Gene id: XLOC_003874
Gene Name: XLOC_003874
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1827-1835
0.018
1
7mer
889-899
0.003
1
6mer
1048-1060
0.002
0
7mer
336-358
0.002
0
RP11-1129I3.1
hsa-miR-455-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568246
Biotype: sense_overlapping
Gene id: ENSG00000260392
Gene Name: RP11-1129I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
528-540
0.026
3
CTD-2207P18.1
hsa-miR-455-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554552
Biotype: lincRNA
Gene id: ENSG00000258425
Gene Name: CTD-2207P18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-43
0.026
4
XLOC_009810
hsa-miR-455-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020476
Biotype: transcript isomorph
Gene id: XLOC_009810
Gene Name: XLOC_009810
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
83-93
0.013
2
8mer
609-627
0.008
Not Conserved
6mer
1301-1326
0.004
1
RP11-8L2.1
hsa-miR-455-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510016
Biotype: antisense
Gene id: ENSG00000250546
Gene Name: RP11-8L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
80-106
0.018
1
6mer
64-85
0.008
1
DLX2-AS1
hsa-miR-455-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448117
Biotype: lincRNA
Gene id: ENSG00000236651
Gene Name: DLX2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
276-294
0.013
0
6mer
830-850
0.005
0
6mer
737-750
0.004
0
6mer
64-84
0.004
1
CTA-941F9.10
hsa-miR-455-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-339
0.008
Not Conserved
7mer
23011-23033
0.006
2
8mer
12416-12431
0.005
0
7mer
1540-1565
0.004
Not Conserved
8mer
11907-11920
0.003
0
RP11-835E18.5
hsa-miR-455-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579933
Biotype: lincRNA
Gene id: ENSG00000265091
Gene Name: RP11-835E18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-162
0.025
1
LL22NC03-86G7.1
hsa-miR-455-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
28857-28879
0.004
11
7mer
3287-3309
0.003
0
7mer
23660-23682
0.002
1
7mer
13956-13973
0.002
0
7mer
36354-36380
0.002
1
7mer
22305-22324
0.002
0
7mer
34654-34668
0.002
3
6mer
18654-18674
0.002
1
7mer
8807-8818
0.001
0
6mer
15870-15895
0.001
1
6mer
32266-32290
0.001
0
6mer
13392-13400
0.001
1
6mer
32621-32629
0.001
2
6mer
12566-12576
0.001
1
6mer
18406-18421
0.001
0
6mer
20509-20529
0.001
1
RP11-44I10.3
hsa-miR-455-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563994
Biotype: antisense
Gene id: ENSG00000261267
Gene Name: RP11-44I10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-93
0.025
1
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