LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
RP11-139J15.2
hsa-miR-455-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607346
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-458
0.026
3
XLOC_006335
hsa-miR-455-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013117
Biotype: transcript isomorph
Gene id: XLOC_006335
Gene Name: XLOC_006335
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-93
0.015
1
7mer
1704-1722
0.011
1
RP11-57H12.2
hsa-miR-455-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434207
Biotype: sense_intronic
Gene id: ENSG00000231992
Gene Name: RP11-57H12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-184
0.026
1
MANEA-AS1
hsa-miR-455-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564541
Biotype: antisense
Gene id: ENSG00000261366
Gene Name: MANEA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1026-1036
0.015
0
7mer
2196-2217
0.007
1
6mer
2143-2163
0.004
1
RP11-434D11.4
hsa-miR-455-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509185
Biotype: lincRNA
Gene id: ENSG00000251072
Gene Name: RP11-434D11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-198
0.026
2
XLOC_010294
hsa-miR-455-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021710
Biotype: transcript isomorph
Gene id: XLOC_010294
Gene Name: XLOC_010294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-187
0.026
0
XLOC_001607
hsa-miR-455-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003808
Biotype: transcript isomorph
Gene id: XLOC_001607
Gene Name: XLOC_001607
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
573-596
0.021
2
7mer
262-276
0.006
0
RP11-313P18.2
hsa-miR-455-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559918
Biotype: lincRNA
Gene id: ENSG00000259241
Gene Name: RP11-313P18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-306
0.026
Not Conserved
RP11-388P9.2
hsa-miR-455-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414383
Biotype: antisense
Gene id: ENSG00000232682
Gene Name: RP11-388P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1194-1212
0.014
3
7mer
822-834
0.012
5
LINC00272
hsa-miR-455-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612603
Biotype: lincRNA
Gene id: ENSG00000203729
Gene Name: LINC00272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
400-407
0.026
1
LINC00882
hsa-miR-455-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477210
Biotype: lincRNA
Gene id: ENSG00000242759
Gene Name: LINC00882
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
212-222
0.026
2
XLOC_012416
hsa-miR-455-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025586
Biotype: transcript isomorph
Gene id: XLOC_012416
Gene Name: XLOC_012416
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-198
0.026
0
FMR1-AS1
hsa-miR-455-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000598667
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-497
0.022
7
6mer
1423-1427
0.004
1
RP3-508I15.21
hsa-miR-455-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609212
Biotype: antisense
Gene id: ENSG00000272669
Gene Name: RP3-508I15.21
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
475-488
0.023
1
6mer
225-251
0.003
1
XLOC_004072
hsa-miR-455-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007434
Biotype: transcript isomorph
Gene id: XLOC_004072
Gene Name: XLOC_004072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1030-1037
0.013
0
7mer
1200-1210
0.008
1
6mer
1157-1167
0.005
4
RP11-699A5.2
hsa-miR-455-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579247
Biotype: lincRNA
Gene id: ENSG00000265984
Gene Name: RP11-699A5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-347
0.026
1
RP11-184M15.1
hsa-miR-455-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514265
Biotype: lincRNA
Gene id: ENSG00000248187
Gene Name: RP11-184M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1030-1037
0.014
0
7mer
1200-1210
0.008
1
6mer
1157-1167
0.004
4
LINC00928
hsa-miR-455-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561108
Biotype: lincRNA
Gene id: ENSG00000259218
Gene Name: LINC00928
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-257
0.026
0
FMR1-AS1
hsa-miR-455-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000601841
Biotype: retained_intron
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-497
0.023
7
6mer
1423-1427
0.002
1
XLOC_004805
hsa-miR-455-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010927
Biotype: transcript isomorph
Gene id: XLOC_004805
Gene Name: XLOC_004805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1362-1371
0.026
1
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