LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
XLOC_009546
hsa-miR-455-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019752
Biotype: transcript isomorph
Gene id: XLOC_009546
Gene Name: XLOC_009546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
141-154
0.027
1
XLOC_008697
hsa-miR-455-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018873
Biotype: transcript isomorph
Gene id: XLOC_008697
Gene Name: XLOC_008697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-438
0.021
1
6mer
431-439
0.006
1
CTD-2541M15.3
hsa-miR-455-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607368
Biotype: lincRNA
Gene id: ENSG00000271743
Gene Name: CTD-2541M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1222-1238
0.017
0
7mer
1182-1206
0.006
0
7mer
981-1007
0.005
1
RP11-44F21.5
hsa-miR-455-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000561705
Biotype: lincRNA
Gene id: ENSG00000260265
Gene Name: RP11-44F21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-752
0.027
1
XLOC_005067
hsa-miR-455-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010539
Biotype: transcript isomorph
Gene id: XLOC_005067
Gene Name: XLOC_005067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-203
0.019
1
7mer
1269-1284
0.008
Not Conserved
RP11-554I8.1
hsa-miR-455-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448835
Biotype: lincRNA
Gene id: ENSG00000225948
Gene Name: RP11-554I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
368-390
0.022
Not Conserved
6mer
289-303
0.005
0
SLC2A1-AS1
hsa-miR-455-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431759
Biotype: lincRNA
Gene id: ENSG00000227533
Gene Name: SLC2A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1117-1122
0.019
0
7mer
174-188
0.008
1
TTN-AS1
hsa-miR-455-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610290
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-572
0.020
6
6mer
435-458
0.005
0
6mer
286-305
0.002
0
RP11-835E18.5
hsa-miR-455-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581170
Biotype: lincRNA
Gene id: ENSG00000265091
Gene Name: RP11-835E18.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-162
0.027
1
AC003003.5
hsa-miR-455-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611742
Biotype: sense_intronic
Gene id: ENSG00000188477
Gene Name: AC003003.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-438
0.023
2
7mer
504-521
0.004
3
RP11-731F5.1
hsa-miR-455-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000479229
Biotype: lincRNA
Gene id: ENSG00000254140
Gene Name: RP11-731F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-334
0.012
0
7mer
171-182
0.009
Not Conserved
7mer
233-256
0.005
Not Conserved
RP11-139J15.2
hsa-miR-455-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414939
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-271
0.027
3
LA16c-361A3.3
hsa-miR-455-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569670
Biotype: antisense
Gene id: ENSG00000261207
Gene Name: LA16c-361A3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
147-162
0.016
2
7mer
69-79
0.011
0
RP11-10C24.1
hsa-miR-455-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000605513
Biotype: lincRNA
Gene id: ENSG00000271020
Gene Name: RP11-10C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-169
0.027
0
INAFM2
hsa-miR-455-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560415
Biotype: antisense
Gene id: ENSG00000259330
Gene Name: INAFM2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-344
0.027
9
RP11-78O7.2
hsa-miR-455-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602532
Biotype: lincRNA
Gene id: ENSG00000270091
Gene Name: RP11-78O7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-50
0.027
0
XLOC_004915
hsa-miR-455-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010981
Biotype: transcript isomorph
Gene id: XLOC_004915
Gene Name: XLOC_004915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
383-398
0.014
0
8mer
473-491
0.013
Not Conserved
RP11-7O11.3
hsa-miR-455-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412378
Biotype: antisense
Gene id: ENSG00000237950
Gene Name: RP11-7O11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-323
0.027
2
LINC01405
hsa-miR-455-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547607
Biotype: lincRNA
Gene id: ENSG00000185847
Gene Name: LINC01405
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
532-543
0.027
2
CTD-3074O7.5
hsa-miR-455-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527092
Biotype: antisense
Gene id: ENSG00000255517
Gene Name: CTD-3074O7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
612-626
0.015
1
7mer
430-443
0.006
1
6mer
761-776
0.003
3
6mer
137-150
0.003
2
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