LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
KB-1980E6.3
hsa-miR-455-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523572
Biotype: lincRNA
Gene id: ENSG00000253633
Gene Name: KB-1980E6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-100
0.022
1
7mer
262-284
0.006
0
NDUFA6-AS1
hsa-miR-455-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439129
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-580
0.010
2
7mer
2283-2309
0.005
2
6mer
679-698
0.003
3
6mer
137-147
0.003
1
7mer
1234-1260
0.003
2
6mer
1728-1747
0.003
3
SOX2-OT
hsa-miR-455-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469278
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-217
0.025
0
6mer
270-278
0.003
1
TSC22D1-AS1
hsa-miR-455-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038381.1
Biotype: antisense
Gene id: NR_038381.1 (gene)
Gene Name: TSC22D1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1792-1815
0.018
1
6mer
2794-2803
0.006
0
6mer
458-485
0.003
3
AC137934.1
hsa-miR-455-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568418
Biotype: lincRNA
Gene id: ENSG00000260923
Gene Name: AC137934.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1826-1846
0.003
0
6mer
2007-2023
0.003
Not Conserved
6mer
1944-1964
0.003
Not Conserved
6mer
1963-1972
0.003
Not Conserved
6mer
2022-2031
0.002
Not Conserved
6mer
1901-1913
0.002
Not Conserved
6mer
1708-1728
0.002
Not Conserved
6mer
1845-1854
0.002
Not Conserved
6mer
1783-1795
0.002
Not Conserved
6mer
1665-1677
0.002
Not Conserved
6mer
1530-1552
0.002
Not Conserved
TSC22D1-AS1
hsa-miR-455-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616360
Biotype: antisense
Gene id: ENSG00000278156
Gene Name: TSC22D1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1795-1818
0.018
1
6mer
2797-2806
0.006
0
6mer
461-488
0.003
3
RP11-285E9.6
hsa-miR-455-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582422
Biotype: lincRNA
Gene id: ENSG00000263718
Gene Name: RP11-285E9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
167-181
0.023
1
6mer
239-259
0.004
Not Conserved
CYP51A1-AS1
hsa-miR-455-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000453068
Biotype: antisense
Gene id: ENSG00000188693
Gene Name: CYP51A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2805-2823
0.026
3
6mer
363-379
0.002
1
RP11-656D10.6
hsa-miR-455-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437060
Biotype: antisense
Gene id: ENSG00000238186
Gene Name: RP11-656D10.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-67
0.015
2
7mer
315-335
0.012
1
PAX8-AS1
hsa-miR-455-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609210
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
723-740
0.027
5
XLOC_005918
hsa-miR-455-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012825
Biotype: transcript isomorph
Gene id: XLOC_005918
Gene Name: XLOC_005918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-140
0.027
1
RP11-131K5.2
hsa-miR-455-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1539-1561
0.027
1
RP11-552D8.1
hsa-miR-455-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457272
Biotype: antisense
Gene id: ENSG00000229258
Gene Name: RP11-552D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-289
0.027
0
XLOC_005815
hsa-miR-455-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012778
Biotype: transcript isomorph
Gene id: XLOC_005815
Gene Name: XLOC_005815
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-460
0.019
1
6mer
567-583
0.005
0
6mer
493-512
0.004
1
SOX2-OT
hsa-miR-455-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597828
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-96
0.024
0
6mer
149-157
0.003
1
XLOC_010915
hsa-miR-455-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022613
Biotype: transcript isomorph
Gene id: XLOC_010915
Gene Name: XLOC_010915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2166-2181
0.027
1
FLJ31306
hsa-miR-455-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554360
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-156
0.027
1
LL22NC03-22D1.1
hsa-miR-455-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10743-10749
0.008
0
7mer
27614-27630
0.004
0
7mer
28833-28845
0.004
0
7mer
15271-15292
0.002
0
7mer
10071-10091
0.002
Not Conserved
6mer
6780-6790
0.002
2
6mer
9354-9374
0.002
1
6mer
6264-6291
0.001
1
6mer
27668-27692
0.001
1
6mer
27694-27702
0.001
0
AC003003.5
hsa-miR-455-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000468219
Biotype: sense_intronic
Gene id: ENSG00000188477
Gene Name: AC003003.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-325
0.023
2
7mer
391-408
0.005
3
AF001548.5
hsa-miR-455-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574212
Biotype: antisense
Gene id: ENSG00000263335
Gene Name: AF001548.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-240
0.027
9
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