LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
RP11-902B17.1
hsa-miR-455-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554086
Biotype: antisense
Gene id: ENSG00000247287
Gene Name: RP11-902B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-116
0.029
1
CTD-2171N6.1
hsa-miR-455-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589125
Biotype: lincRNA
Gene id: ENSG00000267013
Gene Name: CTD-2171N6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2386-2407
0.015
5
8mer
2811-2828
0.014
0
TTC39A-AS1
hsa-miR-455-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564479
Biotype: antisense
Gene id: ENSG00000261664
Gene Name: TTC39A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
691-712
0.029
0
RP11-93B14.9
hsa-miR-455-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617703
Biotype: antisense
Gene id: ENSG00000277496
Gene Name: RP11-93B14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-275
0.020
1
6mer
883-903
0.004
1
6mer
710-726
0.003
1
7mer
1390-1400
0.002
0
ERVMER61-1
hsa-miR-455-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429725
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2058-2064
0.029
0
NDUFA6-AS1
hsa-miR-455-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000434834
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-224
0.015
2
7mer
489-515
0.008
2
6mer
323-342
0.005
3
AC093627.7
hsa-miR-455-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
488-511
0.015
1
6mer
31-40
0.014
1
RP11-733O18.1
hsa-miR-455-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000444185
Biotype: lincRNA
Gene id: ENSG00000236120
Gene Name: RP11-733O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-356
0.029
1
RP11-752D24.2
hsa-miR-455-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510351
Biotype: antisense
Gene id: ENSG00000248115
Gene Name: RP11-752D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2277-2298
0.012
3
7mer
511-524
0.009
1
7mer
854-880
0.006
1
6mer
1599-1603
0.002
1
ENTPD3-AS1
hsa-miR-455-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452768
Biotype: antisense
Gene id: ENSG00000223797
Gene Name: ENTPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-111
0.021
1
7mer
435-444
0.008
0
RP11-686D16.1
hsa-miR-455-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443504
Biotype: lincRNA
Gene id: ENSG00000231662
Gene Name: RP11-686D16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-182
0.029
2
RP11-532F6.3
hsa-miR-455-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606285
Biotype: lincRNA
Gene id: ENSG00000272463
Gene Name: RP11-532F6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1808-1834
0.028
3
RP11-71H17.7
hsa-miR-455-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000568966
Biotype: sense_overlapping
Gene id: ENSG00000260391
Gene Name: RP11-71H17.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-215
0.028
0
RP11-139J15.2
hsa-miR-455-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449529
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-584
0.028
3
XLOC_000318
hsa-miR-455-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001079
Biotype: transcript isomorph
Gene id: XLOC_000318
Gene Name: XLOC_000318
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8892-8906
0.026
1
6mer
7995-8007
0.003
1
RP11-139J15.2
hsa-miR-455-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444660
Biotype: lincRNA
Gene id: ENSG00000152487
Gene Name: RP11-139J15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-447
0.028
3
SOX2-OT
hsa-miR-455-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595313
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-95
0.025
0
6mer
148-156
0.003
1
ARRDC1-AS1
hsa-miR-455-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000623970
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1415-1422
0.022
0
7mer
1806-1813
0.004
0
7mer
1363-1389
0.003
0
LINC00663
hsa-miR-455-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586645
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-152
0.019
0
6mer
83-95
0.008
0
6mer
939-964
0.001
Not Conserved
RP11-272P10.2
hsa-miR-455-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000442428
Biotype: sense_intronic
Gene id: ENSG00000234740
Gene Name: RP11-272P10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-223
0.017
2
7mer
109-123
0.011
0
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