LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
PP14571
hsa-miR-455-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000404327
Biotype: antisense
Gene id: ENSG00000218416
Gene Name: PP14571
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-202
0.029
0
AC005785.2
hsa-miR-455-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597549
Biotype: retained_intron
Gene id: ENSG00000268189
Gene Name: AC005785.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1515-1525
0.029
6
C1orf132
hsa-miR-455-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000487977
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-250
0.018
1
8mer
99-122
0.008
0
7mer
1885-1907
0.003
1
PP14571
hsa-miR-455-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000404891
Biotype: antisense
Gene id: ENSG00000218416
Gene Name: PP14571
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-201
0.029
0
RP11-552D8.1
hsa-miR-455-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430623
Biotype: antisense
Gene id: ENSG00000229258
Gene Name: RP11-552D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-285
0.029
0
AC006548.28
hsa-miR-455-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70708-70717
0.004
0
7mer
863-873
0.004
Not Conserved
7mer
34927-34940
0.004
1
6mer
84030-84038
0.003
1
8mer
7175-7185
0.003
1
7mer
13895-13907
0.002
2
6mer
25417-25437
0.002
0
7mer
38351-38377
0.001
2
6mer
62861-62887
0.001
1
6mer
29625-29644
0.001
1
6mer
3685-3698
0.001
0
7mer
15289-15310
0.001
0
7mer
38967-38976
0.001
Not Conserved
7mer
9090-9108
0.001
Not Conserved
6mer
10018-10034
0.001
0
7mer
9076-9099
0.001
Not Conserved
7mer
9083-9108
0.000
Not Conserved
FMR1-AS1
hsa-miR-455-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000594922
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-497
0.026
7
6mer
1423-1427
0.004
1
RP11-158H5.7
hsa-miR-455-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586922
Biotype: lincRNA
Gene id: ENSG00000268573
Gene Name: RP11-158H5.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1926-1938
0.020
1
7mer
482-497
0.009
1
PCDH9-AS3
hsa-miR-455-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434073
Biotype: antisense
Gene id: ENSG00000225263
Gene Name: PCDH9-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
251-259
0.029
1
LHFPL3-AS1
hsa-miR-455-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433514
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
667-681
0.019
1
7mer
512-527
0.010
1
LINC00272
hsa-miR-455-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367563
Biotype: lincRNA
Gene id: ENSG00000203729
Gene Name: LINC00272
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-557
0.029
1
XLOC_013064
hsa-miR-455-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1769-1786
0.013
1
6mer
807-818
0.006
1
6mer
2519-2528
0.005
0
6mer
1829-1840
0.005
1
RP11-124N3.2
hsa-miR-455-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513955
Biotype: lincRNA
Gene id: ENSG00000251487
Gene Name: RP11-124N3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
793-799
0.029
1
MIR4697HG
hsa-miR-455-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024344.1
Biotype: lincRNA
Gene id: NR_024344.1 (gene)
Gene Name: MIR4697HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1472-1489
0.022
1
7mer
3857-3866
0.004
1
6mer
1006-1020
0.002
1
6mer
2341-2364
0.001
1
AC125421.1
hsa-miR-455-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000455366
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1807-1821
0.018
1
6mer
2214-2224
0.006
1
7mer
634-655
0.005
1
ERVMER61-1
hsa-miR-455-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614505
Biotype: lincRNA
Gene id: ENSG00000230426
Gene Name: ERVMER61-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1910-1916
0.029
0
MAMDC2-AS1
hsa-miR-455-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451488
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-189
0.029
1
XLOC_013784
hsa-miR-455-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028432
Biotype: transcript isomorph
Gene id: XLOC_013784
Gene Name: XLOC_013784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-109
0.029
1
XLOC_005220
hsa-miR-455-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011758
Biotype: transcript isomorph
Gene id: XLOC_005220
Gene Name: XLOC_005220
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
161-184
0.029
1
RP11-15A1.7
hsa-miR-455-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589021
Biotype: antisense
Gene id: ENSG00000266921
Gene Name: RP11-15A1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1604-1613
0.024
Not Conserved
7mer
1975-1990
0.005
1
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