LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
AP003774.6
hsa-miR-455-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
422-444
0.013
0
7mer
894-907
0.009
0
6mer
465-473
0.008
1
AC087499.10
hsa-miR-455-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000428134
Biotype: lincRNA
Gene id: ENSG00000227685
Gene Name: AC087499.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-408
0.021
1
6mer
45-58
0.004
0
7mer
320-335
0.004
0
LINC00308
hsa-miR-455-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419431
Biotype: lincRNA
Gene id: ENSG00000184856
Gene Name: LINC00308
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
680-706
0.026
0
6mer
340-356
0.004
0
LAMTOR5-AS1
hsa-miR-455-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585433
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
642-656
0.017
0
8mer
466-478
0.013
1
CTD-2031P19.5
hsa-miR-455-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000576302
Biotype: antisense
Gene id: ENSG00000262211
Gene Name: CTD-2031P19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-436
0.017
4
7mer
566-590
0.013
4
LINC00473
hsa-miR-455-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000584911
Biotype: lincRNA
Gene id: ENSG00000223414
Gene Name: LINC00473
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2056-2068
0.021
1
7mer
871-879
0.009
0
GS1-5L10.1
hsa-miR-455-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522980
Biotype: antisense
Gene id: ENSG00000253576
Gene Name: GS1-5L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-346
0.030
1
AC090505.1
hsa-miR-455-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427064
Biotype: lincRNA
Gene id: ENSG00000238031
Gene Name: AC090505.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
407-419
0.030
3
LINC01495
hsa-miR-455-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534135
Biotype: lincRNA
Gene id: ENSG00000255323
Gene Name: LINC01495
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-175
0.030
2
CTD-3049M7.1
hsa-miR-455-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557777
Biotype: lincRNA
Gene id: ENSG00000258754
Gene Name: CTD-3049M7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-202
0.025
1
6mer
214-235
0.005
1
CTD-2236F14.1
hsa-miR-455-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511327
Biotype: antisense
Gene id: ENSG00000249713
Gene Name: CTD-2236F14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-314
0.027
1
6mer
1131-1142
0.003
1
RP11-552D8.1
hsa-miR-455-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429499
Biotype: antisense
Gene id: ENSG00000229258
Gene Name: RP11-552D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-114
0.030
0
FMR1-AS1
hsa-miR-455-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000596112
Biotype: antisense
Gene id: ENSG00000268066
Gene Name: FMR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-497
0.026
7
6mer
1423-1427
0.004
1
XLOC_006892
hsa-miR-455-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014814
Biotype: transcript isomorph
Gene id: XLOC_006892
Gene Name: XLOC_006892
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-38
0.023
1
7mer
200-222
0.006
0
ITPK1-AS1
hsa-miR-455-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553639
Biotype: antisense
Gene id: ENSG00000258730
Gene Name: ITPK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4452-4460
0.018
1
6mer
66-77
0.009
3
6mer
1572-1582
0.003
3
XLOC_008658
hsa-miR-455-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018379
Biotype: transcript isomorph
Gene id: XLOC_008658
Gene Name: XLOC_008658
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-398
0.029
1
LINC01478
hsa-miR-455-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591487
Biotype: lincRNA
Gene id: ENSG00000267337
Gene Name: LINC01478
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-504
0.029
Not Conserved
RP11-500B12.1
hsa-miR-455-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450938
Biotype: lincRNA
Gene id: ENSG00000233569
Gene Name: RP11-500B12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1197-1214
0.029
0
CTA-125H2.2
hsa-miR-455-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000600903
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-388
0.029
1
AC131056.3
hsa-miR-455-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000618848
Biotype: antisense
Gene id: ENSG00000274767
Gene Name: AC131056.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-174
0.020
0
6mer
386-402
0.008
2
6mer
88-112
0.001
Not Conserved
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