LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
CTD-2623N2.5
hsa-miR-455-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590046
Biotype: lincRNA
Gene id: ENSG00000266950
Gene Name: CTD-2623N2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-139
0.032
2
RP11-240L7.4
hsa-miR-455-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448857
Biotype: antisense
Gene id: ENSG00000232283
Gene Name: RP11-240L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-190
0.032
1
C1orf132
hsa-miR-455-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608023
Biotype: lincRNA
Gene id: ENSG00000203709
Gene Name: C1orf132
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12269-12292
0.007
1
8mer
895-909
0.005
1
7mer
457-469
0.003
1
7mer
13927-13949
0.003
1
6mer
11165-11173
0.002
0
8mer
4702-4728
0.002
Not Conserved
8mer
12141-12164
0.002
0
7mer
7034-7046
0.002
0
6mer
11634-11658
0.002
2
7mer
5185-5195
0.002
1
7mer
10552-10563
0.001
0
6mer
11441-11458
0.001
0
RP11-552D8.1
hsa-miR-455-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446560
Biotype: antisense
Gene id: ENSG00000229258
Gene Name: RP11-552D8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-113
0.031
0
CTA-390C10.9
hsa-miR-455-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609964
Biotype: lincRNA
Gene id: ENSG00000272798
Gene Name: CTA-390C10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-252
0.009
Not Conserved
7mer
351-369
0.008
Not Conserved
7mer
292-310
0.007
Not Conserved
7mer
410-428
0.007
Not Conserved
ARRDC1-AS1
hsa-miR-455-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000371417
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
971-978
0.026
0
7mer
919-945
0.005
0
XLOC_001343
hsa-miR-455-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002818
Biotype: transcript isomorph
Gene id: XLOC_001343
Gene Name: XLOC_001343
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2857-2882
0.029
0
6mer
653-676
0.002
0
LINC00589
hsa-miR-455-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518623
Biotype: lincRNA
Gene id: ENSG00000251191
Gene Name: LINC00589
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-234
0.031
2
RP11-29G8.3
hsa-miR-455-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563635
Biotype: processed_transcript
Gene id: ENSG00000261553
Gene Name: RP11-29G8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
326-347
0.025
5
8mer
2128-2152
0.005
1
6mer
1382-1398
0.001
1
XLOC_013588
hsa-miR-455-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028579
Biotype: transcript isomorph
Gene id: XLOC_013588
Gene Name: XLOC_013588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-235
0.031
8
XLOC_006705
hsa-miR-455-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014604
Biotype: transcript isomorph
Gene id: XLOC_006705
Gene Name: XLOC_006705
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-210
0.016
1
8mer
1326-1334
0.010
1
6mer
1897-1905
0.003
0
6mer
1245-1252
0.002
0
XLOC_006485
hsa-miR-455-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013855
Biotype: transcript isomorph
Gene id: XLOC_006485
Gene Name: XLOC_006485
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-278
0.028
0
6mer
545-560
0.003
0
RP11-82L7.4
hsa-miR-455-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560503
Biotype: lincRNA
Gene id: ENSG00000259223
Gene Name: RP11-82L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
326-341
0.031
1
XLOC_010037
hsa-miR-455-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020749
Biotype: transcript isomorph
Gene id: XLOC_010037
Gene Name: XLOC_010037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-411
0.031
1
RP11-1086F11.1
hsa-miR-455-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417786
Biotype: sense_intronic
Gene id: ENSG00000225300
Gene Name: RP11-1086F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-485
0.031
1
RP11-484O2.1
hsa-miR-455-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515495
Biotype: antisense
Gene id: ENSG00000251379
Gene Name: RP11-484O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-840
0.031
1
AC073254.1
hsa-miR-455-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597193
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-337
0.017
1
6mer
5-22
0.013
2
LINC01226
hsa-miR-455-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412068
Biotype: lincRNA
Gene id: ENSG00000223907
Gene Name: LINC01226
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2486-2508
0.011
1
7mer
2621-2640
0.007
0
7mer
331-347
0.005
Not Conserved
6mer
2639-2651
0.004
1
7mer
1073-1089
0.003
0
XLOC_010769
hsa-miR-455-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022430
Biotype: transcript isomorph
Gene id: XLOC_010769
Gene Name: XLOC_010769
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1657-1670
0.030
1
XLOC_013042
hsa-miR-455-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026994
Biotype: transcript isomorph
Gene id: XLOC_013042
Gene Name: XLOC_013042
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1200-1211
0.019
1
7mer
1512-1532
0.008
1
6mer
755-765
0.003
1
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