LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-455-3p


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Gene
miRNA
Score
DIANA Links
CEBPA-AS1
hsa-miR-455-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592982
Biotype: antisense
Gene id: ENSG00000267296
Gene Name: CEBPA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2085-2096
0.030
1
6mer
1640-1650
0.003
1
LOC100507346
hsa-miR-455-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_038982.1
Biotype: antisense
Gene id: NR_038982.1 (gene)
Gene Name: LOC100507346
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
942-964
0.018
10
7mer
1912-1928
0.012
3
6mer
1305-1319
0.003
0
RP11-96K19.4
hsa-miR-455-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000562952
Biotype: sense_overlapping
Gene id: ENSG00000261654
Gene Name: RP11-96K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5643-5668
0.033
0
RP11-527F13.1
hsa-miR-455-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444229
Biotype: lincRNA
Gene id: ENSG00000231842
Gene Name: RP11-527F13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-45
0.032
4
XLOC_001358
hsa-miR-455-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003583
Biotype: transcript isomorph
Gene id: XLOC_001358
Gene Name: XLOC_001358
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-97
0.032
1
AC006458.3
hsa-miR-455-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000445093
Biotype: lincRNA
Gene id: ENSG00000227489
Gene Name: AC006458.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
616-626
0.032
1
LINC01102
hsa-miR-455-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414442
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-122
0.032
12
XLOC_002588
hsa-miR-455-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005407
Biotype: transcript isomorph
Gene id: XLOC_002588
Gene Name: XLOC_002588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-511
0.032
2
RP11-218E20.3
hsa-miR-455-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553648
Biotype: lincRNA
Gene id: ENSG00000258711
Gene Name: RP11-218E20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4672-4697
0.023
1
7mer
3213-3227
0.004
0
7mer
928-948
0.002
0
6mer
3567-3589
0.002
1
6mer
1728-1751
0.001
Not Conserved
SOX2-OT
hsa-miR-455-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472856
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-33
0.028
0
6mer
86-94
0.004
1
RP11-22D3.2
hsa-miR-455-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564222
Biotype: lincRNA
Gene id: ENSG00000261815
Gene Name: RP11-22D3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-88
0.029
0
6mer
552-567
0.003
0
RP11-408J6.1
hsa-miR-455-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561254
Biotype: sense_intronic
Gene id: ENSG00000259554
Gene Name: RP11-408J6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-180
0.032
0
AP000688.11
hsa-miR-455-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000436303
Biotype: antisense
Gene id: ENSG00000236677
Gene Name: AP000688.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-337
0.032
0
CTD-2140G10.4
hsa-miR-455-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534543
Biotype: antisense
Gene id: ENSG00000254540
Gene Name: CTD-2140G10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
50-69
0.032
0
RP11-6N13.4
hsa-miR-455-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523745
Biotype: lincRNA
Gene id: ENSG00000253776
Gene Name: RP11-6N13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-131
0.032
0
CTD-2313F11.1
hsa-miR-455-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000615560
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-103
0.022
1
7mer
748-774
0.010
1
XLOC_006349
hsa-miR-455-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013687
Biotype: transcript isomorph
Gene id: XLOC_006349
Gene Name: XLOC_006349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
58-72
0.018
0
6mer
389-404
0.013
0
LINC00994
hsa-miR-455-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485805
Biotype: lincRNA
Gene id: ENSG00000189196
Gene Name: LINC00994
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1678-1687
0.029
1
6mer
60-73
0.002
0
RP11-746B8.1
hsa-miR-455-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582239
Biotype: antisense
Gene id: ENSG00000263765
Gene Name: RP11-746B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-337
0.029
0
7mer
22-32
0.002
0
RP11-128P17.4
hsa-miR-455-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609980
Biotype: lincRNA
Gene id: ENSG00000273119
Gene Name: RP11-128P17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-455-3p
Sequence: gcaguccaugggcauauacac
MirBase ID: MIMAT0004784
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-529
0.032
1
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