LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-423-3p


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Gene
miRNA
Score
DIANA Links
CTD-3195I5.5
hsa-miR-423-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572988
Biotype: lincRNA
Gene id: ENSG00000262194
Gene Name: CTD-3195I5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-302
0.030
1
XLOC_004804
hsa-miR-423-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4600-4626
0.016
1
9mer
4929-4955
0.014
1
RP11-321L2.1
hsa-miR-423-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423440
Biotype: lincRNA
Gene id: ENSG00000231460
Gene Name: RP11-321L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1367-1378
0.029
6
XLOC_007301
hsa-miR-423-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015656
Biotype: transcript isomorph
Gene id: XLOC_007301
Gene Name: XLOC_007301
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1364-1375
0.029
6
XLOC_008721
hsa-miR-423-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018426
Biotype: transcript isomorph
Gene id: XLOC_008721
Gene Name: XLOC_008721
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-294
0.029
1
XLOC_011117
hsa-miR-423-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022385
Biotype: transcript isomorph
Gene id: XLOC_011117
Gene Name: XLOC_011117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5309-5328
0.021
1
8mer
5619-5640
0.006
0
LINC00470
hsa-miR-423-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578835
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-35
0.027
Not Conserved
RP11-713P17.3
hsa-miR-423-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532327
Biotype: lincRNA
Gene id: ENSG00000204241
Gene Name: RP11-713P17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1723-1748
0.027
0
RP11-713P17.3
hsa-miR-423-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533922
Biotype: lincRNA
Gene id: ENSG00000204241
Gene Name: RP11-713P17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2168-2193
0.027
0
XLOC_011484
hsa-miR-423-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3019-3036
0.027
0
RP5-1025A1.3
hsa-miR-423-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613001
Biotype: lincRNA
Gene id: ENSG00000275358
Gene Name: RP5-1025A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-338
0.027
1
LINC00536
hsa-miR-423-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505156
Biotype: lincRNA
Gene id: ENSG00000249917
Gene Name: LINC00536
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-628
0.022
0
7mer
2274-2300
0.005
Not Conserved
XLOC_010725
hsa-miR-423-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022315
Biotype: transcript isomorph
Gene id: XLOC_010725
Gene Name: XLOC_010725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
481-504
0.026
0
AC006116.15
hsa-miR-423-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
784-810
0.026
0
HNRNPUL2-BSCL2
hsa-miR-423-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037946.1
Biotype: sense
Gene id: NR_037946.1 (gene)
Gene Name: HNRNPUL2-BSCL2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3756-3783
0.016
9
7mer
3149-3172
0.010
7
RP11-524F11.2
hsa-miR-423-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583662
Biotype: antisense
Gene id: ENSG00000264666
Gene Name: RP11-524F11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-159
0.014
4
7mer
301-323
0.011
1
TPTEP1
hsa-miR-423-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000588424
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1317-1322
0.026
0
LINC00470
hsa-miR-423-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584492
Biotype: lincRNA
Gene id: ENSG00000132204
Gene Name: LINC00470
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-426
0.025
Not Conserved
C14orf64
hsa-miR-423-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556138
Biotype: lincRNA
Gene id: ENSG00000246223
Gene Name: C14orf64
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-284
0.025
1
HOXA10-HOXA9
hsa-miR-423-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1180-1190
0.025
6
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