LncBase Experimental v.2
Help
Download
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-423-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
LINC00265
hsa-miR-423-3p
0.410
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000340510
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Whisnant Adam W et al. 2013
Cervix
TZMBL
IP
Tested Cell Line: TZMBL
Category: Cancer/Malignant
Experimental Condition: shRNs against HIV-1
Location
Region
Method
Result
Validation Type
Source
7:39791780-39791808
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00657
hsa-miR-423-3p
0.379
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000565493
Biotype: lincRNA
Gene id: ENSG00000260032
Gene Name: LINC00657
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:36050841-36050869
exon
HITS-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
20:36050841-36050869
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00847
hsa-miR-423-3p
0.609
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000501855
Biotype: lincRNA
Gene id: ENSG00000245060
Gene Name: LINC00847
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:180835607-180835635
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00969
hsa-miR-423-3p
0.422
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000445430
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:195684214-195684242
exon
HITS-CLIP
DIRECT
LncBasev2
LOC100268168
hsa-miR-423-3p
0.384
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: NR_026683.1
Biotype: antisense
Gene id: NR_026683.1 (gene)
Gene Name: LOC100268168
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:172958745-172958773
exon
HITS-CLIP
DIRECT
LncBasev2
5:172958745-172958773
exon
HITS-CLIP
DIRECT
LncBasev2
5:172958745-172958773
exon
HITS-CLIP
DIRECT
LncBasev2
MIA-RAB4B
hsa-miR-423-3p
0.499
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: NR_037775.1
Biotype: sense
Gene id: NR_037775.1 (gene)
Gene Name: MIA-RAB4B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:40796692-40796720
exon
HITS-CLIP
DIRECT
LncBasev2
MIR124-2HG
hsa-miR-423-3p
0.508
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000521441
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:64382659-64382687
exon
HITS-CLIP
DIRECT
LncBasev2
MIR4534
hsa-miR-423-3p
0.504
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:37989385-37989413
exon
HITS-CLIP
DIRECT
LncBasev2
MIR663AHG
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000601079
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209452-26209480
exon
HITS-CLIP
DIRECT
LncBasev2
MIR663AHG
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 20
Transcript: ENST00000609687
Biotype: lincRNA
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209840-26209868
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:26209840-26209868
exon
HITS-CLIP
DIRECT
LncBasev2
NFYC-AS1
hsa-miR-423-3p
0.487
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000606277
Biotype: antisense
Gene id: ENSG00000272145
Gene Name: NFYC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:40691435-40691463
exon
HITS-CLIP
DIRECT
LncBasev2
RAB4B-EGLN2
hsa-miR-423-3p
0.385
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: NR_037791.1
Biotype: sense
Gene id: NR_037791.1 (gene)
Gene Name: RAB4B-EGLN2
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
19:40801071-40801099
exon
HITS-CLIP
DIRECT
LncBasev2
RAD51L3-RFFL
hsa-miR-423-3p
0.429
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:35011989-35012017
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-118H4.1
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000411586
Biotype: processed_pseudogene
Gene id: ENSG00000229965
Gene Name: RP11-118H4.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:226439286-226439314
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-165H4.3
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000395413
Biotype: processed_pseudogene
Gene id: ENSG00000213644
Gene Name: RP11-165H4.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:64182214-64182242
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-214K3.20
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000602601
Biotype: sense_intronic
Gene id: ENSG00000269938
Gene Name: RP11-214K3.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:123968281-123968309
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-270C12.3
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000416095
Biotype: processed_pseudogene
Gene id: ENSG00000224550
Gene Name: RP11-270C12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:107505217-107505245
exon
HITS-CLIP
DIRECT
LncBasev2
RP1-140A9.1
hsa-miR-423-3p
0.375
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000412228
Biotype: antisense
Gene id: ENSG00000231050
Gene Name: RP1-140A9.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
1:1891608-1891636
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-555J4.4
hsa-miR-423-3p
0.364
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000430787
Biotype: antisense
Gene id: ENSG00000223440
Gene Name: RP11-555J4.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
9:32634721-32634749
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-602M11.3
hsa-miR-423-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000570019
Biotype: processed_pseudogene
Gene id: ENSG00000259904
Gene Name: RP11-602M11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-423-3p
Sequence: agcucggucugaggccccucagu
MirBase ID: MIMAT0001340
Related Diseases:

Publication
Tissue
Cell Type
Methods
Kameswaran V et al. 2014
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:34374085-34374113
exon
HITS-CLIP
DIRECT
LncBasev2
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept