LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-505P4.7
hsa-miR-375
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429386
Biotype: antisense
Gene id: ENSG00000229862
Gene Name: RP11-505P4.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
429-446
0.025
1
RP11-822E23.8
hsa-miR-375
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426261
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-183
0.025
0
RP1-225E12.3
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585874
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
534-556
0.010
11
7mer
401-424
0.010
1
6mer
242-261
0.005
2
RP11-265P11.1
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000438026
Biotype: lincRNA
Gene id: ENSG00000224610
Gene Name: RP11-265P11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-530
0.025
4
RP11-349H17.2
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000615734
Biotype: sense_intronic
Gene id: ENSG00000275805
Gene Name: RP11-349H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
142-167
0.008
7
7mer
911-933
0.006
1
6mer
223-240
0.005
1
6mer
386-410
0.005
3
RP11-882G5.1
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529088
Biotype: lincRNA
Gene id: ENSG00000255039
Gene Name: RP11-882G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-34
0.019
0
6mer
91-107
0.006
0
RP11-673E11.2
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567082
Biotype: lincRNA
Gene id: ENSG00000261257
Gene Name: RP11-673E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
998-1021
0.025
9
RP11-121G22.3
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550302
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-185
0.014
1
7mer
374-392
0.011
2
RP11-396B14.2
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572466
Biotype: lincRNA
Gene id: ENSG00000263033
Gene Name: RP11-396B14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
917-931
0.025
2
RP11-15B24.5
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588492
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-406
0.014
2
6mer
446-471
0.006
4
6mer
371-393
0.005
2
RP11-105C19.2
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567401
Biotype: lincRNA
Gene id: ENSG00000260973
Gene Name: RP11-105C19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
948-974
0.021
3
6mer
262-287
0.003
0
XLOC_008705
hsa-miR-375
0.702
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017683
Biotype: transcript isomorph
Gene id: XLOC_008705
Gene Name: XLOC_008705
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6-26
0.025
1
LINC01515
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598902
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-158
0.019
1
6mer
114-133
0.006
1
XLOC_009487
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019173
Biotype: transcript isomorph
Gene id: XLOC_009487
Gene Name: XLOC_009487
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
805-831
0.014
3
6mer
21-36
0.006
Not Conserved
6mer
222-245
0.005
0
RAD51-AS1
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000533146
Biotype: antisense
Gene id: ENSG00000245849
Gene Name: RAD51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-399
0.014
0
6mer
87-109
0.006
0
6mer
29-49
0.005
0
LINC01114
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425879
Biotype: lincRNA
Gene id: ENSG00000234177
Gene Name: LINC01114
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-84
0.025
2
AC013271.3
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417926
Biotype: lincRNA
Gene id: ENSG00000186148
Gene Name: AC013271.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2678-2695
0.015
0
6mer
509-521
0.003
0
6mer
490-516
0.003
0
6mer
482-503
0.003
0
RP11-626H12.3
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511013
Biotype: lincRNA
Gene id: ENSG00000248844
Gene Name: RP11-626H12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
807-833
0.014
3
6mer
23-38
0.006
Not Conserved
6mer
224-247
0.005
0
AC011525.2
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562167
Biotype: lincRNA
Gene id: ENSG00000261400
Gene Name: AC011525.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5228-5249
0.018
1
8mer+mismatch
738-757
0.003
Not Conserved
6mer
707-729
0.002
0
6mer
1738-1745
0.002
1
MIR99AHG
hsa-miR-375
0.701
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000619222
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
153-170
0.011
10
6mer
3014-3025
0.006
5
6mer
3069-3089
0.005
4
6mer
2149-2171
0.002
0
6mer
1927-1945
0.002
0
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