LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-874J12.4
hsa-miR-375
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577848
Biotype: antisense
Gene id: ENSG00000266401
Gene Name: RP11-874J12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1278-1301
0.012
7
6mer
1391-1418
0.008
4
6mer
1092-1115
0.005
3
RP11-552O4.1
hsa-miR-375
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584560
Biotype: lincRNA
Gene id: ENSG00000263382
Gene Name: RP11-552O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-523
0.021
1
6mer
201-225
0.004
1
AC098617.1
hsa-miR-375
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428980
Biotype: antisense
Gene id: ENSG00000233766
Gene Name: AC098617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-193
0.015
Not Conserved
7mer
335-357
0.010
0
RP11-753A21.1
hsa-miR-375
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561121
Biotype: lincRNA
Gene id: ENSG00000259478
Gene Name: RP11-753A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
122-146
0.011
8
6mer
384-395
0.008
6
6mer
179-183
0.006
Not Conserved
SSBP3-AS1
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103541.1
Biotype: antisense
Gene id: NR_103541.1 (gene)
Gene Name: SSBP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2572-2587
0.015
8
6mer
573-597
0.005
2
6mer
1801-1813
0.003
2
6mer
887-908
0.002
0
CISTR
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_104332.1
Biotype: lincRNA
Gene id: NR_104332.1 (gene)
Gene Name: CISTR
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-280
0.025
5
LINC01146
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556684
Biotype: lincRNA
Gene id: ENSG00000258867
Gene Name: LINC01146
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-315
0.025
5
RP11-326C3.11
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602429
Biotype: antisense
Gene id: ENSG00000251661
Gene Name: RP11-326C3.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1099-1121
0.022
0
6mer
673-690
0.003
Not Conserved
SSBP3-AS1
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000361350
Biotype: antisense
Gene id: ENSG00000198711
Gene Name: SSBP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2575-2590
0.015
8
6mer
576-600
0.005
2
6mer
1804-1816
0.003
2
6mer
890-911
0.002
0
MIRLET7DHG
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000602602
Biotype: lincRNA
Gene id: ENSG00000230262
Gene Name: MIRLET7DHG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
883-902
0.011
2
6mer
988-1014
0.006
2
6mer
924-946
0.004
1
6mer
842-869
0.004
1
AC116366.6
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000443093
Biotype: antisense
Gene id: ENSG00000234290
Gene Name: AC116366.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3096-3121
0.017
6
6mer
1059-1075
0.004
3
6mer
1546-1566
0.004
5
AC034110.1
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000616078
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1304-1322
0.016
Not Conserved
6mer
60-84
0.005
1
6mer
812-832
0.004
1
GPR123-AS1
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444433
Biotype: antisense
Gene id: ENSG00000256925
Gene Name: GPR123-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2114-2138
0.012
0
6mer
9-34
0.007
0
6mer
2182-2197
0.005
1
6mer
758-781
0.002
0
RP11-503P10.1
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607407
Biotype: antisense
Gene id: ENSG00000272056
Gene Name: RP11-503P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-333
0.025
8
STARD13-AS
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608496
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-252
0.020
0
6mer
611-629
0.005
0
DISC1FP1
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000569513
Biotype: retained_intron
Gene id: ENSG00000261645
Gene Name: DISC1FP1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1040-1064
0.008
7
6mer
1524-1550
0.005
Not Conserved
6mer
1491-1502
0.005
1
6mer
1533-1555
0.004
Not Conserved
6mer
1184-1198
0.003
Not Conserved
XLOC_010500
hsa-miR-375
0.704
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021905
Biotype: transcript isomorph
Gene id: XLOC_010500
Gene Name: XLOC_010500
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1215-1235
0.005
1
6mer
1631-1653
0.005
1
6mer
1484-1503
0.005
1
6mer
150-175
0.004
0
6mer
921-938
0.003
1
6mer
1546-1570
0.002
Not Conserved
AC006115.3
hsa-miR-375
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595954
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1742-1764
0.006
0
6mer
2033-2052
0.005
1
6mer
1895-1910
0.004
1
6mer
1216-1239
0.003
1
6mer
659-678
0.003
1
6mer
1055-1076
0.003
1
RP11-15B24.5
hsa-miR-375
0.703
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590667
Biotype: lincRNA
Gene id: ENSG00000228430
Gene Name: RP11-15B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-536
0.019
2
6mer
501-523
0.006
2
AC008277.1
hsa-miR-375
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608714
Biotype: antisense
Gene id: ENSG00000223642
Gene Name: AC008277.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
457-475
0.025
7
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