LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
LINC00298
hsa-miR-375
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015405.1
Biotype: lincRNA
Gene id: NR_015405.1 (gene)
Gene Name: LINC00298
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2055-2078
0.020
0
6mer
1493-1516
0.005
1
PAPPA-AS1
hsa-miR-375
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445861
Biotype: antisense
Gene id: ENSG00000256040
Gene Name: PAPPA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1760-1780
0.008
8
6mer
2275-2294
0.006
3
6mer
2267-2294
0.006
3
7mer
1268-1283
0.005
0
LOC643923
hsa-miR-375
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028328.1
Biotype: sense
Gene id: NR_028328.1 (gene)
Gene Name: LOC643923
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-726
0.019
1
6mer
827-851
0.006
5
SATB1-AS1
hsa-miR-375
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595388
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-163
0.015
0
6mer
485-511
0.010
7
ALKBH3-AS1
hsa-miR-375
0.708
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534287
Biotype: antisense
Gene id: ENSG00000244926
Gene Name: ALKBH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-272
0.025
5
STARD13-AS
hsa-miR-375
0.708
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609615
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-309
0.019
0
6mer
908-932
0.003
0
6mer
668-686
0.003
0
XLOC_009643
hsa-miR-375
0.708
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020304
Biotype: transcript isomorph
Gene id: XLOC_009643
Gene Name: XLOC_009643
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
714-732
0.006
0
6mer
714-723
0.006
0
6mer
765-779
0.005
0
6mer
338-360
0.005
0
6mer
578-601
0.004
0
XLOC_007004
hsa-miR-375
0.708
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014933
Biotype: transcript isomorph
Gene id: XLOC_007004
Gene Name: XLOC_007004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-29
0.025
0
XLOC_011331
hsa-miR-375
0.708
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023486
Biotype: transcript isomorph
Gene id: XLOC_011331
Gene Name: XLOC_011331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
610-630
0.017
0
6mer
2108-2121
0.008
1
RP5-855D21.3
hsa-miR-375
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000609090
Biotype: sense_intronic
Gene id: ENSG00000272812
Gene Name: RP5-855D21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-40
0.025
1
RP11-95O2.5
hsa-miR-375
0.707
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589281
Biotype: antisense
Gene id: ENSG00000267707
Gene Name: RP11-95O2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
99-109
0.014
9
6mer
646-672
0.011
6
XLOC_008669
hsa-miR-375
0.707
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018389
Biotype: transcript isomorph
Gene id: XLOC_008669
Gene Name: XLOC_008669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-347
0.025
0
RP11-799D4.2
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590144
Biotype: processed_transcript
Gene id: ENSG00000266981
Gene Name: RP11-799D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-153
0.022
0
6mer
176-194
0.004
0
MIR490
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608269
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1291-1316
0.018
6
6mer
1032-1052
0.004
3
6mer
941-959
0.003
5
LCMT1-AS2
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
198-217
0.019
1
6mer
1165-1188
0.006
1
AC097467.2
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609486
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-694
0.017
1
6mer
235-256
0.004
1
6mer
325-342
0.004
0
STARD13-AS
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000586727
Biotype: retained_intron
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-750
0.021
3
6mer
571-597
0.004
Not Conserved
RP11-180C16.1
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610193
Biotype: antisense
Gene id: ENSG00000273489
Gene Name: RP11-180C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2631-2643
0.018
8
6mer
51-73
0.004
2
6mer
1948-1963
0.002
1
6mer
1580-1594
0.001
0
RP11-594N15.3
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565862
Biotype: sense_overlapping
Gene id: ENSG00000260398
Gene Name: RP11-594N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3128-3146
0.011
1
6mer
293-313
0.006
2
6mer
3684-3711
0.006
1
6mer
1419-1437
0.002
3
XLOC_012116
hsa-miR-375
0.706
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025157
Biotype: transcript isomorph
Gene id: XLOC_012116
Gene Name: XLOC_012116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1321-1342
0.021
1
6mer
180-203
0.004
0
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