LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
AC079630.2
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000457989
Biotype: lincRNA
Gene id: ENSG00000223914
Gene Name: AC079630.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
225-244
0.015
0
6mer
279-305
0.006
1
6mer
291-310
0.005
0
AP000476.1
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453784
Biotype: lincRNA
Gene id: ENSG00000237484
Gene Name: AP000476.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1141-1162
0.005
0
6mer
679-703
0.005
2
6mer
2542-2561
0.004
0
6mer
2578-2605
0.004
Not Conserved
6mer
2380-2403
0.003
0
6mer
1740-1751
0.002
0
6mer
1576-1587
0.002
0
6mer
1749-1770
0.001
0
XLOC_004446
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010008
Biotype: transcript isomorph
Gene id: XLOC_004446
Gene Name: XLOC_004446
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-134
0.025
5
RP11-212I21.5
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000611626
Biotype: lincRNA
Gene id: ENSG00000274508
Gene Name: RP11-212I21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-95
0.025
1
AC097467.2
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609716
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
592-611
0.016
1
6mer
89-110
0.005
1
6mer
179-196
0.004
0
RP11-213G2.2
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418478
Biotype: lincRNA
Gene id: ENSG00000230303
Gene Name: RP11-213G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-173
0.025
2
XLOC_012877
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026185
Biotype: transcript isomorph
Gene id: XLOC_012877
Gene Name: XLOC_012877
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4900-4919
0.016
1
6mer
1678-1701
0.003
3
6mer
4027-4052
0.002
1
6mer
2341-2359
0.002
1
6mer
3761-3773
0.002
0
6mer
2265-2287
0.001
1
GS1-358P8.4
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4911-4929
0.011
5
7mer
1953-1967
0.010
6
6mer
735-760
0.003
2
6mer
2767-2793
0.001
Not Conserved
RP11-631N16.2
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6719-6739
0.010
3
6mer
532-553
0.005
0
7mer
1522-1542
0.004
0
7mer
4747-4763
0.003
1
6mer
5324-5342
0.002
1
6mer
1805-1820
0.002
1
LOC101926889
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109994.1
Biotype: antisense
Gene id: NR_109994.1 (gene)
Gene Name: LOC101926889
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1192-1209
0.007
1
7mer
935-955
0.006
0
7mer
851-870
0.006
0
6mer
304-317
0.005
1
6mer
1135-1155
0.001
1
XLOC_005906
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011606
Biotype: transcript isomorph
Gene id: XLOC_005906
Gene Name: XLOC_005906
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
286-313
0.013
0
6mer
663-677
0.013
0
C8orf12
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529305
Biotype: processed_transcript
Gene id: ENSG00000184608
Gene Name: C8orf12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-251
0.020
0
6mer
168-185
0.006
0
RP11-861A13.4
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110030.1
Biotype: lincRNA
Gene id: NR_110030.1 (gene)
Gene Name: RP11-861A13.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-138
0.009
0
6mer
161-187
0.005
1
6mer
2270-2295
0.005
2
6mer
1396-1419
0.004
4
6mer
1515-1525
0.002
2
XLOC_000027
hsa-miR-375
0.711
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001924
Biotype: transcript isomorph
Gene id: XLOC_000027
Gene Name: XLOC_000027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-198
0.025
0
LINC00240
hsa-miR-375
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607607
Biotype: lincRNA
Gene id: ENSG00000224843
Gene Name: LINC00240
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1597-1605
0.007
0
6mer
4835-4859
0.004
1
6mer
4646-4668
0.003
1
7mer
3750-3764
0.003
0
6mer
800-827
0.003
1
6mer
4842-4865
0.003
2
6mer
1766-1789
0.001
0
6mer
1628-1649
0.001
1
6mer
1839-1864
0.001
0
MUC19
hsa-miR-375
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000474954
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
520-537
0.014
1
7mer
1628-1652
0.006
0
7mer
2732-2750
0.005
0
TMEM254-AS1
hsa-miR-375
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448729
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1678-1699
0.012
Not Conserved
7mer
422-440
0.010
0
6mer
1627-1646
0.004
0
RP5-956O18.2
hsa-miR-375
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440729
Biotype: antisense
Gene id: ENSG00000227006
Gene Name: RP5-956O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-41
0.020
1
6mer
223-240
0.005
1
RP11-379K17.12
hsa-miR-375
0.709
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599781
Biotype: antisense
Gene id: ENSG00000268220
Gene Name: RP11-379K17.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1749-1753
0.008
3
6mer
1336-1362
0.004
1
6mer
529-554
0.004
1
6mer
428-450
0.004
2
6mer
1354-1371
0.003
0
6mer
710-719
0.003
2
RP11-886D15.1
hsa-miR-375
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545630
Biotype: lincRNA
Gene id: ENSG00000256422
Gene Name: RP11-886D15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-92
0.021
1
6mer
298-302
0.005
1
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