LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_013042
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026994
Biotype: transcript isomorph
Gene id: XLOC_013042
Gene Name: XLOC_013042
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
622-642
0.010
2
6mer
1962-1984
0.006
1
6mer
1680-1697
0.005
6
6mer
1342-1364
0.003
1
6mer
1131-1156
0.002
1
RP11-356I2.4
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607671
Biotype: antisense
Gene id: ENSG00000237499
Gene Name: RP11-356I2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
32-47
0.012
5
6mer
8-12
0.007
0
6mer
2-12
0.006
0
RP11-761I4.3
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559781
Biotype: antisense
Gene id: ENSG00000259343
Gene Name: RP11-761I4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-275
0.026
8
LINC00310
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609062
Biotype: lincRNA
Gene id: ENSG00000227456
Gene Name: LINC00310
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-69
0.019
4
6mer
507-528
0.006
3
XLOC_008955
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018604
Biotype: transcript isomorph
Gene id: XLOC_008955
Gene Name: XLOC_008955
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
783-808
0.020
4
6mer
795-813
0.006
1
XLOC_012852
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026210
Biotype: transcript isomorph
Gene id: XLOC_012852
Gene Name: XLOC_012852
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
57-73
0.017
12
7mer
1694-1712
0.004
1
6mer
2461-2474
0.002
1
6mer
2241-2261
0.002
1
RP11-251P6.1
hsa-miR-375
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000594455
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-341
0.026
2
RP11-413H22.2
hsa-miR-375
0.714
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563090
Biotype: antisense
Gene id: ENSG00000260621
Gene Name: RP11-413H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-531
0.026
6
CYYR1-AS1
hsa-miR-375
0.714
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000357401
Biotype: antisense
Gene id: ENSG00000197934
Gene Name: CYYR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2899-2918
0.012
0
6mer
2735-2753
0.005
1
6mer
2990-3003
0.003
0
6mer
778-791
0.002
Not Conserved
6mer
2072-2099
0.002
0
6mer
1083-1103
0.002
0
AC097467.2
hsa-miR-375
0.713
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608544
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-614
0.017
1
6mer
155-176
0.005
1
6mer
245-262
0.004
0
LHX5-AS1
hsa-miR-375
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551357
Biotype: antisense
Gene id: ENSG00000257935
Gene Name: LHX5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-367
0.026
6
AC008269.2
hsa-miR-375
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438070
Biotype: lincRNA
Gene id: ENSG00000229321
Gene Name: AC008269.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
106-130
0.019
0
6mer
517-525
0.006
1
XLOC_002384
hsa-miR-375
0.713
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004489
Biotype: transcript isomorph
Gene id: XLOC_002384
Gene Name: XLOC_002384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1507-1532
0.021
1
6mer
1121-1125
0.004
0
XLOC_001602
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002650
Biotype: transcript isomorph
Gene id: XLOC_001602
Gene Name: XLOC_001602
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
211-237
0.021
4
6mer
1676-1698
0.004
1
AC078842.4
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447529
Biotype: lincRNA
Gene id: ENSG00000231114
Gene Name: AC078842.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-33
0.026
2
LINC01004
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
291-312
0.005
1
6mer
214-229
0.005
1
6mer
8705-8726
0.003
0
6mer
5276-5287
0.003
3
6mer
7730-7752
0.002
2
6mer
6001-6026
0.002
1
6mer
7186-7204
0.002
0
6mer
4579-4589
0.001
1
6mer
3693-3715
0.001
1
GJA9-MYCBP
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1689-1703
0.015
3
7mer
1964-1972
0.008
0
6mer
831-846
0.003
0
RP11-716H6.2
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526777
Biotype: antisense
Gene id: ENSG00000255219
Gene Name: RP11-716H6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-379
0.025
7
XLOC_013495
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028137
Biotype: transcript isomorph
Gene id: XLOC_013495
Gene Name: XLOC_013495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-184
0.016
0
6mer
1891-1895
0.006
1
6mer
1296-1315
0.004
0
RP11-259O2.1
hsa-miR-375
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511693
Biotype: lincRNA
Gene id: ENSG00000248994
Gene Name: RP11-259O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
680-700
0.016
Not Conserved
6mer
68-95
0.009
1
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