LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_010037
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020749
Biotype: transcript isomorph
Gene id: XLOC_010037
Gene Name: XLOC_010037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-282
0.014
0
7mer
478-501
0.012
1
AC097467.2
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609254
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
536-555
0.016
1
6mer
33-54
0.005
1
6mer
123-140
0.005
0
RP11-29B2.6
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000615349
Biotype: lincRNA
Gene id: ENSG00000276957
Gene Name: RP11-29B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-358
0.020
1
6mer
79-92
0.006
1
RP11-138P22.1
hsa-miR-375
0.717
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-231
0.023
1
6mer
1565-1581
0.003
1
RP6-24A23.3
hsa-miR-375
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000436013
Biotype: antisense
Gene id: ENSG00000237863
Gene Name: RP6-24A23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-559
0.021
8
6mer
792-815
0.005
1
RP4-798P15.3
hsa-miR-375
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000466953
Biotype: retained_intron
Gene id: ENSG00000254154
Gene Name: RP4-798P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5493-5511
0.018
6
6mer
665-682
0.004
2
6mer
4828-4854
0.002
0
6mer
2058-2074
0.002
5
XIST
hsa-miR-375
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2270-2292
0.008
2
7mer
4416-4441
0.007
1
7mer
15712-15738
0.003
0
6mer
2037-2055
0.002
0
6mer
15780-15802
0.002
3
6mer
2874-2901
0.002
1
6mer
1948-1957
0.002
3
6mer
10758-10782
0.001
Not Conserved
PHKA1-AS1
hsa-miR-375
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420998
Biotype: antisense
Gene id: ENSG00000231944
Gene Name: PHKA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-42
0.026
0
RP11-434I12.2
hsa-miR-375
0.717
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520894
Biotype: antisense
Gene id: ENSG00000250295
Gene Name: RP11-434I12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
53-79
0.014
6
6mer
13-35
0.012
9
CLSTN2-AS1
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_108084.1
Biotype: antisense
Gene id: NR_108084.1 (gene)
Gene Name: CLSTN2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2286-2302
0.018
1
6mer
259-281
0.007
3
6mer
1470-1496
0.001
0
HMGN3-AS1
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604516
Biotype: antisense
Gene id: ENSG00000270362
Gene Name: HMGN3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1693-1710
0.013
4
6mer
2876-2900
0.008
3
6mer
1968-1989
0.003
3
6mer
1448-1475
0.002
2
MYT1L-AS1
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422175
Biotype: antisense
Gene id: ENSG00000225619
Gene Name: MYT1L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-188
0.014
1
6mer
246-269
0.004
4
6mer
2893-2912
0.004
4
6mer
1255-1278
0.003
4
6mer
1406-1431
0.002
5
LINC00690
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000429949
Biotype: lincRNA
Gene id: ENSG00000233570
Gene Name: LINC00690
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-96
0.026
3
PDXDC2P
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561788
Biotype: retained_intron
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8-18
0.007
0
6mer
14-28
0.007
0
6mer
21-44
0.006
0
6mer
26-49
0.005
0
CTD-2008P7.1
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1135-1146
0.014
1
6mer
2564-2581
0.006
0
6mer
1948-1965
0.003
0
6mer
1327-1346
0.002
0
XLOC_007193
hsa-miR-375
0.716
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015150
Biotype: transcript isomorph
Gene id: XLOC_007193
Gene Name: XLOC_007193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
840-859
0.021
0
6mer
425-444
0.005
1
XLOC_010427
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021825
Biotype: transcript isomorph
Gene id: XLOC_010427
Gene Name: XLOC_010427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-95
0.026
3
XLOC_013474
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028118
Biotype: transcript isomorph
Gene id: XLOC_013474
Gene Name: XLOC_013474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
111-134
0.026
1
RP11-540O11.8
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000624853
Biotype: sense_intronic
Gene id: ENSG00000280036
Gene Name: RP11-540O11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
800-815
0.010
7
6mer
813-825
0.006
6
6mer
1745-1770
0.005
1
6mer
1276-1297
0.005
1
CADM3-AS1
hsa-miR-375
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415675
Biotype: antisense
Gene id: ENSG00000225670
Gene Name: CADM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-55
0.017
2
6mer
3131-3155
0.005
1
6mer
260-283
0.003
0
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