LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
HOXC-AS3
hsa-miR-375
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567780
Biotype: retained_intron
Gene id: ENSG00000251151
Gene Name: HOXC-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-202
0.022
1
6mer
2337-2353
0.004
1
XLOC_006088
hsa-miR-375
0.721
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013440
Biotype: transcript isomorph
Gene id: XLOC_006088
Gene Name: XLOC_006088
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1006-1029
0.005
1
6mer
1004-1024
0.005
1
6mer
1022-1034
0.005
0
6mer
993-1019
0.004
0
6mer
339-355
0.003
0
6mer
293-315
0.003
0
RP11-102C16.3
hsa-miR-375
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417644
Biotype: antisense
Gene id: ENSG00000227907
Gene Name: RP11-102C16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-416
0.026
2
RP11-258F22.2
hsa-miR-375
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564417
Biotype: lincRNA
Gene id: ENSG00000260137
Gene Name: RP11-258F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
242-264
0.014
0
6mer
71-81
0.012
1
RP11-374A4.1
hsa-miR-375
0.720
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503488
Biotype: lincRNA
Gene id: ENSG00000249359
Gene Name: RP11-374A4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3856-3864
0.006
0
6mer
633-657
0.005
1
6mer
824-845
0.004
2
6mer
627-650
0.003
2
7mer
1692-1712
0.003
0
6mer
4630-4655
0.002
0
6mer
3669-3692
0.001
0
6mer
3594-3619
0.001
0
6mer
3812-3833
0.001
1
LINC01132
hsa-miR-375
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437601
Biotype: lincRNA
Gene id: ENSG00000227630
Gene Name: LINC01132
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3619-3632
0.009
4
6mer
3407-3422
0.007
4
6mer
329-352
0.006
4
7mer
1331-1352
0.003
0
6mer
1174-1196
0.002
0
XLOC_011448
hsa-miR-375
0.720
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5428-5451
0.010
6
7mer
1978-2003
0.006
3
6mer
8211-8232
0.002
1
6mer
8808-8826
0.002
1
6mer
5229-5246
0.002
2
6mer
7022-7049
0.001
4
6mer
8572-8592
0.001
0
6mer
1468-1488
0.001
1
RP11-461F11.3
hsa-miR-375
0.720
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559363
Biotype: lincRNA
Gene id: ENSG00000259582
Gene Name: RP11-461F11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
823-842
0.016
1
7mer
885-907
0.011
1
RP11-20D14.6
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540299
Biotype: lincRNA
Gene id: ENSG00000249790
Gene Name: RP11-20D14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-163
0.018
Not Conserved
7mer
272-294
0.008
Not Conserved
RP5-1021I20.2
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555539
Biotype: lincRNA
Gene id: ENSG00000258586
Gene Name: RP5-1021I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
112-136
0.006
1
6mer
802-829
0.006
2
6mer
173-199
0.006
1
6mer
443-467
0.005
0
6mer
675-693
0.004
0
RP11-575L7.2
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439378
Biotype: antisense
Gene id: ENSG00000226877
Gene Name: RP11-575L7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-208
0.026
2
RP11-20D14.6
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000514568
Biotype: lincRNA
Gene id: ENSG00000249790
Gene Name: RP11-20D14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-163
0.018
Not Conserved
7mer
272-294
0.008
Not Conserved
RP3-473B4.3
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000441841
Biotype: lincRNA
Gene id: ENSG00000236091
Gene Name: RP3-473B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-127
0.018
Not Conserved
6mer
942-960
0.008
1
ZNF385D-AS2
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000448980
Biotype: lincRNA
Gene id: ENSG00000223351
Gene Name: ZNF385D-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-369
0.026
2
DNAJC3-AS1
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000499499
Biotype: lincRNA
Gene id: ENSG00000247400
Gene Name: DNAJC3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2592-2614
0.012
2
7mer
1353-1378
0.006
Not Conserved
6mer
2301-2327
0.003
0
6mer
601-619
0.002
0
6mer
1017-1035
0.002
1
AC007308.6
hsa-miR-375
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1094-1105
0.015
Not Conserved
6mer
296-306
0.007
0
6mer
1067-1091
0.003
0
6mer
1071-1096
0.001
0
PWRN2
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
425-434
0.010
1
7mer
1136-1160
0.006
1
6mer
2667-2689
0.004
1
6mer
1200-1225
0.003
0
6mer
1627-1653
0.002
Not Conserved
6mer
1446-1468
0.001
Not Conserved
RP13-1039J1.2
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000490013
Biotype: lincRNA
Gene id: ENSG00000184115
Gene Name: RP13-1039J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-241
0.017
1
6mer
2398-2410
0.003
0
6mer
2403-2429
0.003
0
6mer
2416-2437
0.003
0
XLOC_011480
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024123
Biotype: transcript isomorph
Gene id: XLOC_011480
Gene Name: XLOC_011480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
970-992
0.016
1
6mer
1713-1721
0.005
Not Conserved
6mer
1634-1656
0.005
0
CTD-2586B10.1
hsa-miR-375
0.718
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593792
Biotype: lincRNA
Gene id: ENSG00000268480
Gene Name: CTD-2586B10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
390-414
0.017
0
6mer
316-343
0.009
2
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