LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-550I24.2
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460796
Biotype: retained_intron
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-347
0.021
4
6mer
444-460
0.005
0
RP1-17K7.1
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533832
Biotype: sense_intronic
Gene id: ENSG00000254627
Gene Name: RP1-17K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-305
0.017
0
7mer
41-67
0.010
1
XLOC_011604
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023827
Biotype: transcript isomorph
Gene id: XLOC_011604
Gene Name: XLOC_011604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2382-2399
0.019
0
7mer
2251-2273
0.008
0
MIR490
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000598184
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
178-197
0.016
1
7mer
30-51
0.011
1
RP11-295M18.6
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609941
Biotype: lincRNA
Gene id: ENSG00000272823
Gene Name: RP11-295M18.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-212
0.027
4
RP11-768G7.2
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462528
Biotype: lincRNA
Gene id: ENSG00000241213
Gene Name: RP11-768G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-35
0.027
2
LINC01500
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553762
Biotype: lincRNA
Gene id: ENSG00000258583
Gene Name: LINC01500
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-494
0.022
5
6mer
507-514
0.005
4
RP11-121G22.3
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549161
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
776-794
0.010
2
7mer
566-587
0.010
1
6mer
275-292
0.006
5
XLOC_008528
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-194
0.013
0
6mer
233-254
0.006
1
7mer
1919-1946
0.005
0
6mer
1604-1630
0.002
0
6mer
1610-1635
0.001
1
CTD-3187F8.11
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594261
Biotype: lincRNA
Gene id: ENSG00000268318
Gene Name: CTD-3187F8.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
805-825
0.018
1
6mer
181-195
0.005
0
6mer
629-650
0.004
1
CTC-444N24.11
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593427
Biotype: lincRNA
Gene id: ENSG00000268205
Gene Name: CTC-444N24.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4243-4253
0.017
1
7mer
1911-1936
0.007
1
6mer
1567-1571
0.003
1
LUCAT1
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513492
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-254
0.027
4
RP4-715N11.2
hsa-miR-375
0.725
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000413070
Biotype: lincRNA
Gene id: ENSG00000232294
Gene Name: RP4-715N11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-185
0.027
4
LINC00173
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000480237
Biotype: lincRNA
Gene id: ENSG00000196668
Gene Name: LINC00173
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
333-352
0.026
5
RP11-478P10.1
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109900.1
Biotype: lincRNA
Gene id: NR_109900.1 (gene)
Gene Name: RP11-478P10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-253
0.020
2
6mer
4011-4032
0.004
1
6mer
2656-2681
0.002
0
6mer
2556-2574
0.001
2
FLJ37505
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614177
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1807-1832
0.014
1
6mer
1951-1976
0.007
1
6mer
1140-1165
0.003
1
6mer
829-847
0.003
1
XLOC_013771
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028418
Biotype: transcript isomorph
Gene id: XLOC_013771
Gene Name: XLOC_013771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1057-1078
0.004
0
7mer
1449-1470
0.004
Not Conserved
6mer
374-395
0.004
1
6mer
861-882
0.003
0
7mer
1351-1372
0.003
Not Conserved
6mer
472-493
0.002
Not Conserved
6mer
1253-1274
0.001
1
6mer
3185-3206
0.001
Not Conserved
6mer
1645-1666
0.001
Not Conserved
6mer
1155-1176
0.001
Not Conserved
6mer
1547-1568
0.001
Not Conserved
6mer
3180-3206
0.001
Not Conserved
XLOC_002577
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005946
Biotype: transcript isomorph
Gene id: XLOC_002577
Gene Name: XLOC_002577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
944-959
0.016
8
6mer
816-830
0.011
7
SPANXA2-OT1
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000622372
Biotype: lincRNA
Gene id: ENSG00000277215
Gene Name: SPANXA2-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1283-1309
0.018
2
6mer
1377-1396
0.005
1
6mer
79-98
0.003
0
LINC00310
hsa-miR-375
0.724
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000428914
Biotype: lincRNA
Gene id: ENSG00000227456
Gene Name: LINC00310
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-107
0.019
4
6mer
545-566
0.008
3
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