LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
LINC00397
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_104059.1
Biotype: lincRNA
Gene id: NR_104059.1 (gene)
Gene Name: LINC00397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
150-165
0.020
3
6mer
132-143
0.006
1
TMEM254-AS1
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412298
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2849-2870
0.012
Not Conserved
6mer
3-22
0.006
0
7mer
1269-1287
0.005
0
6mer
2474-2493
0.004
0
LINC01533
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590719
Biotype: lincRNA
Gene id: ENSG00000267779
Gene Name: LINC01533
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-98
0.014
Not Conserved
6mer
389-409
0.012
8
RP11-251P6.1
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624229
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-591
0.027
2
RP11-90C1.1
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547569
Biotype: lincRNA
Gene id: ENSG00000257879
Gene Name: RP11-90C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-760
0.021
1
6mer
310-337
0.006
2
RP11-141J13.3
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574133
Biotype: lincRNA
Gene id: ENSG00000262921
Gene Name: RP11-141J13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-151
0.027
0
RP11-236L14.2
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616608
Biotype: lincRNA
Gene id: ENSG00000273771
Gene Name: RP11-236L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2338-2352
0.013
0
6mer
1977-1997
0.004
2
7mer
1576-1595
0.004
Not Conserved
6mer
967-985
0.003
2
6mer
896-914
0.002
1
RP11-456D7.1
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582246
Biotype: antisense
Gene id: ENSG00000263787
Gene Name: RP11-456D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-121
0.027
7
XLOC_004016
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008529
Biotype: transcript isomorph
Gene id: XLOC_004016
Gene Name: XLOC_004016
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
541-565
0.015
1
6mer
1041-1066
0.006
1
6mer
896-918
0.005
2
RP11-279O17.2
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562361
Biotype: lincRNA
Gene id: ENSG00000260003
Gene Name: RP11-279O17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-260
0.027
4
XLOC_003440
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
878-901
0.012
0
7mer
82-109
0.011
Not Conserved
6mer
1405-1423
0.004
1
SEPT7-AS1
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424194
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-153
0.027
1
TMLHE-AS1
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433624
Biotype: antisense
Gene id: ENSG00000224533
Gene Name: TMLHE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1631-1649
0.023
1
6mer
717-721
0.004
0
ERVK3-1
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000413518
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
833-853
0.018
1
6mer
618-636
0.006
1
6mer
373-400
0.003
0
AC009542.2
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412549
Biotype: antisense
Gene id: ENSG00000231794
Gene Name: AC009542.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6-27
0.006
1
6mer
223-250
0.006
1
6mer
1616-1637
0.005
0
6mer
1781-1799
0.005
1
7mer
909-928
0.005
0
RP11-506B6.6
hsa-miR-375
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590584
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-574
0.018
1
7mer
320-339
0.009
0
RP11-692C24.2
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555396
Biotype: lincRNA
Gene id: ENSG00000258765
Gene Name: RP11-692C24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
64-79
0.006
0
6mer
477-495
0.006
3
6mer
45-66
0.006
0
6mer
391-407
0.004
1
6mer
228-248
0.004
0
LINC01206
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482787
Biotype: lincRNA
Gene id: ENSG00000242512
Gene Name: LINC01206
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7210-7231
0.007
2
7mer
1453-1475
0.006
2
6mer
8971-8981
0.006
4
6mer
279-298
0.004
0
6mer
3177-3198
0.002
1
6mer
3672-3692
0.001
0
RP11-436I24.1
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027113.2
Biotype: antisense
Gene id: NR_027113.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
876-890
0.012
5
7mer
768-782
0.005
1
6mer
544-566
0.004
0
6mer
892-914
0.003
1
6mer
211-233
0.003
Not Conserved
XLOC_009281
hsa-miR-375
0.726
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019478
Biotype: transcript isomorph
Gene id: XLOC_009281
Gene Name: XLOC_009281
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-110
0.027
1
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