LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
CTD-3203P2.1
hsa-miR-375
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567108
Biotype: antisense
Gene id: ENSG00000259940
Gene Name: CTD-3203P2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
254-266
0.015
1
7mer
1241-1267
0.012
0
RP11-79C6.3
hsa-miR-375
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503269
Biotype: antisense
Gene id: ENSG00000249748
Gene Name: RP11-79C6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-372
0.027
0
CTB-113D17.1
hsa-miR-375
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609495
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-441
0.027
2
RP1-84O15.2
hsa-miR-375
0.731
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522460
Biotype: lincRNA
Gene id: ENSG00000253108
Gene Name: RP1-84O15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-484
0.015
1
6mer
274-295
0.007
1
6mer
494-521
0.005
1
RP11-53B2.3
hsa-miR-375
0.730
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585366
Biotype: antisense
Gene id: ENSG00000267136
Gene Name: RP11-53B2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4212-4231
0.005
0
6mer
3983-4010
0.005
2
6mer
4367-4387
0.004
1
6mer
4205-4209
0.004
1
6mer
3914-3939
0.002
0
6mer
1298-1313
0.002
0
6mer
3135-3155
0.002
1
6mer
2961-2981
0.001
2
6mer
1278-1300
0.001
1
6mer
3110-3130
0.001
2
LOC100129917
hsa-miR-375
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
520-536
0.011
1
6mer
49-75
0.011
0
7mer
684-702
0.005
Not Conserved
RP11-478K15.6
hsa-miR-375
0.730
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421190
Biotype: lincRNA
Gene id: ENSG00000230731
Gene Name: RP11-478K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3152-3173
0.021
4
6mer
1312-1335
0.003
7
6mer
1466-1493
0.002
1
6mer
1461-1480
0.001
2
RP11-440L14.1
hsa-miR-375
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
520-536
0.016
1
6mer
49-75
0.011
0
U95743.1
hsa-miR-375
0.730
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576944
Biotype: lincRNA
Gene id: ENSG00000262267
Gene Name: U95743.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-124
0.018
1
6mer
111-125
0.009
2
LINC00963
hsa-miR-375
0.730
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
746-773
0.013
1
6mer
3695-3719
0.002
0
6mer
8463-8489
0.002
1
6mer
4906-4929
0.002
3
6mer
4789-4805
0.002
1
6mer
6480-6504
0.002
0
6mer
4058-4082
0.002
0
6mer
7917-7936
0.001
0
6mer
1890-1911
0.001
0
6mer
6546-6571
0.001
0
RP11-309L24.4
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609480
Biotype: lincRNA
Gene id: ENSG00000272899
Gene Name: RP11-309L24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3572-3590
0.008
4
6mer
3609-3630
0.008
4
6mer
3099-3118
0.005
3
6mer
3340-3359
0.005
4
AC034110.1
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611889
Biotype: lincRNA
Gene id: ENSG00000276397
Gene Name: AC034110.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1364-1382
0.009
Not Conserved
6mer
1935-1950
0.006
2
6mer
1497-1523
0.004
3
6mer
120-144
0.004
1
6mer
872-892
0.003
1
AC116035.1
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450746
Biotype: lincRNA
Gene id: ENSG00000227260
Gene Name: AC116035.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-369
0.021
2
6mer
364-379
0.006
1
KB-1410C5.2
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523121
Biotype: lincRNA
Gene id: ENSG00000253679
Gene Name: KB-1410C5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-673
0.019
1
6mer
34-60
0.008
1
LOC100129917
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
520-536
0.016
1
6mer
49-75
0.011
0
AC009299.3
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439050
Biotype: lincRNA
Gene id: ENSG00000227403
Gene Name: AC009299.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1336-1360
0.014
0
6mer
280-300
0.004
2
6mer
1666-1683
0.004
3
6mer
1748-1768
0.003
1
6mer
1425-1429
0.002
1
RAB11B-AS1
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593581
Biotype: antisense
Gene id: ENSG00000269386
Gene Name: RAB11B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-24
0.014
Not Conserved
6mer
72-99
0.007
2
6mer
12-34
0.006
1
RP3-417O22.3
hsa-miR-375
0.729
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442184
Biotype: antisense
Gene id: ENSG00000224384
Gene Name: RP3-417O22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-356
0.022
3
6mer
348-365
0.005
2
RP11-111A22.1
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561460
Biotype: antisense
Gene id: ENSG00000259536
Gene Name: RP11-111A22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
807-827
0.010
5
6mer
2239-2261
0.007
4
6mer
42-65
0.005
0
6mer
1401-1425
0.002
1
6mer
1398-1417
0.002
0
RP11-588L15.2
hsa-miR-375
0.728
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514187
Biotype: antisense
Gene id: ENSG00000250893
Gene Name: RP11-588L15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
716-736
0.016
4
6mer
853-857
0.010
6
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