LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-720D4.3
hsa-miR-375
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532606
Biotype: lincRNA
Gene id: ENSG00000255183
Gene Name: RP11-720D4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-519
0.024
6
6mer
207-221
0.003
2
CTD-2015G9.2
hsa-miR-375
0.734
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562064
Biotype: lincRNA
Gene id: ENSG00000261175
Gene Name: CTD-2015G9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-137
0.022
1
6mer
318-338
0.006
0
RP11-532F6.5
hsa-miR-375
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607084
Biotype: lincRNA
Gene id: ENSG00000271911
Gene Name: RP11-532F6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
228-249
0.013
9
6mer
400-416
0.005
5
6mer
719-745
0.005
7
6mer
805-823
0.004
6
XLOC_004360
hsa-miR-375
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010676
Biotype: transcript isomorph
Gene id: XLOC_004360
Gene Name: XLOC_004360
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-483
0.027
1
AC105053.3
hsa-miR-375
0.734
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000366278
Biotype: antisense
Gene id: ENSG00000229498
Gene Name: AC105053.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-79
0.022
2
6mer
683-708
0.005
1
XLOC_013571
hsa-miR-375
0.733
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027955
Biotype: transcript isomorph
Gene id: XLOC_013571
Gene Name: XLOC_013571
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
39-62
0.006
1
6mer
45-67
0.006
0
6mer
31-57
0.006
1
6mer
464-479
0.005
5
6mer
110-133
0.005
1
RP3-439F8.1
hsa-miR-375
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426112
Biotype: antisense
Gene id: ENSG00000234869
Gene Name: RP3-439F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-428
0.017
2
6mer
34-61
0.008
1
6mer
877-902
0.002
1
AC073043.1
hsa-miR-375
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608985
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-81
0.021
1
6mer
134-155
0.006
1
RP11-761I4.3
hsa-miR-375
0.733
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560851
Biotype: antisense
Gene id: ENSG00000259343
Gene Name: RP11-761I4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-203
0.027
8
XLOC_012891
hsa-miR-375
0.733
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026572
Biotype: transcript isomorph
Gene id: XLOC_012891
Gene Name: XLOC_012891
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-260
0.027
1
RP11-369C8.1
hsa-miR-375
0.733
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554431
Biotype: lincRNA
Gene id: ENSG00000258616
Gene Name: RP11-369C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-200
0.014
3
7mer
320-344
0.008
1
6mer
154-170
0.005
2
RP11-565N2.1
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000568112
Biotype: lincRNA
Gene id: ENSG00000261453
Gene Name: RP11-565N2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-100
0.027
3
AC018742.1
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435682
Biotype: lincRNA
Gene id: ENSG00000229621
Gene Name: AC018742.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1255-1270
0.015
5
6mer
48-70
0.009
4
6mer
590-605
0.003
0
AC097467.2
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608463
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
789-808
0.017
1
6mer
28-49
0.005
1
6mer
118-135
0.005
0
RP11-146D12.2
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421686
Biotype: processed_transcript
Gene id: ENSG00000240240
Gene Name: RP11-146D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1066-1091
0.017
1
6mer
824-843
0.004
0
6mer
614-638
0.004
1
6mer
1246-1266
0.002
0
RP11-277P12.20
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500682
Biotype: antisense
Gene id: ENSG00000245648
Gene Name: RP11-277P12.20
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1024-1044
0.020
0
6mer
1983-2006
0.004
1
6mer
1412-1434
0.002
2
6mer
1573-1600
0.002
1
LINC00342
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103734.1
Biotype: lincRNA
Gene id: NR_103734.1 (gene)
Gene Name: LINC00342
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1037-1054
0.011
0
7mer
1439-1450
0.006
0
6mer
68-89
0.006
0
6mer
2980-3002
0.005
0
XLOC_010353
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021759
Biotype: transcript isomorph
Gene id: XLOC_010353
Gene Name: XLOC_010353
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2608-2629
0.012
Not Conserved
7mer
1748-1775
0.011
2
6mer
48-73
0.004
0
FLJ26245
hsa-miR-375
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565625
Biotype: lincRNA
Gene id: ENSG00000261122
Gene Name: FLJ26245
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
495-515
0.020
0
6mer
669-686
0.007
0
STARD13-AS
hsa-miR-375
0.731
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609061
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-188
0.023
0
6mer
446-464
0.004
0
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