LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-326N17.2
hsa-miR-375
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612997
Biotype: lincRNA
Gene id: ENSG00000274281
Gene Name: RP11-326N17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-259
0.017
0
6mer
294-310
0.005
Not Conserved
6mer
1165-1177
0.003
Not Conserved
6mer
964-988
0.002
0
6mer
1077-1089
0.001
Not Conserved
LINC01277
hsa-miR-375
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419957
Biotype: lincRNA
Gene id: ENSG00000229017
Gene Name: LINC01277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
239-255
0.015
1
6mer
1806-1832
0.004
0
6mer
1774-1797
0.003
1
6mer
1795-1813
0.003
0
6mer
1767-1787
0.003
Not Conserved
RP11-506M13.3
hsa-miR-375
0.737
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000482985
Biotype: lincRNA
Gene id: ENSG00000244733
Gene Name: RP11-506M13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1559-1586
0.013
0
6mer
96-121
0.008
1
6mer
1244-1270
0.004
0
6mer
1250-1275
0.003
1
DNM3OS
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2211-2232
0.010
5
7mer
6043-6052
0.006
1
7mer
6356-6375
0.005
2
6mer
1588-1592
0.002
3
6mer
5563-5581
0.002
3
6mer
3865-3886
0.002
1
6mer
1557-1573
0.000
0
LINC01410
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2838-2854
0.020
0
6mer
1198-1213
0.008
0
RP11-244H18.1
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621705
Biotype: antisense
Gene id: ENSG00000276888
Gene Name: RP11-244H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2122-2149
0.014
0
7mer
1079-1095
0.006
1
6mer
1038-1061
0.004
3
6mer
844-859
0.003
1
XLOC_007530
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016137
Biotype: transcript isomorph
Gene id: XLOC_007530
Gene Name: XLOC_007530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-109
0.018
1
6mer
551-571
0.005
3
6mer
358-382
0.005
1
RP11-46C24.7
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570267
Biotype: antisense
Gene id: ENSG00000259877
Gene Name: RP11-46C24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1818-1842
0.015
0
7mer
1635-1658
0.008
0
6mer
1512-1536
0.003
0
6mer
1507-1524
0.002
0
XLOC_000316
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001058
Biotype: transcript isomorph
Gene id: XLOC_000316
Gene Name: XLOC_000316
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
898-922
0.021
8
6mer
1813-1838
0.006
4
LINC00309
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431020
Biotype: lincRNA
Gene id: ENSG00000230923
Gene Name: LINC00309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
569-593
0.018
5
6mer
344-359
0.007
5
6mer
1116-1139
0.003
3
HOXA-AS3
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000524304
Biotype: antisense
Gene id: ENSG00000254369
Gene Name: HOXA-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1985-2010
0.022
10
6mer
1119-1142
0.003
1
6mer
1128-1149
0.002
4
ENTPD1-AS1
hsa-miR-375
0.736
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416301
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3459-3480
0.012
4
6mer
3704-3726
0.005
5
6mer
488-512
0.004
1
6mer
3454-3480
0.002
7
6mer
2201-2211
0.002
1
6mer
3632-3648
0.002
0
LINC01085
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502759
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
771-785
0.012
1
6mer
1729-1755
0.006
1
6mer
1794-1820
0.004
1
6mer
537-557
0.004
Not Conserved
LINC00397
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000422074
Biotype: lincRNA
Gene id: ENSG00000223404
Gene Name: LINC00397
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-172
0.021
3
6mer
139-150
0.007
1
RP11-161H23.5
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550468
Biotype: antisense
Gene id: ENSG00000258232
Gene Name: RP11-161H23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-673
0.018
1
7mer
462-478
0.010
5
LINC00238
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000432289
Biotype: lincRNA
Gene id: ENSG00000196553
Gene Name: LINC00238
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
122-138
0.015
9
7mer
335-356
0.007
Not Conserved
6mer
346-372
0.005
2
RP11-20D14.6
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000422780
Biotype: lincRNA
Gene id: ENSG00000249790
Gene Name: RP11-20D14.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-180
0.019
Not Conserved
7mer
289-311
0.008
Not Conserved
RP11-525K10.3
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565050
Biotype: antisense
Gene id: ENSG00000259867
Gene Name: RP11-525K10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-333
0.023
1
6mer
1235-1259
0.005
1
RP11-714M23.2
hsa-miR-375
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000620778
Biotype: lincRNA
Gene id: ENSG00000277837
Gene Name: RP11-714M23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4863-4890
0.009
7
6mer
4414-4440
0.007
8
7mer
2599-2622
0.007
8
6mer
3863-3881
0.002
1
6mer
3686-3707
0.002
1
RP11-319F12.2
hsa-miR-375
0.734
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444155
Biotype: lincRNA
Gene id: ENSG00000227121
Gene Name: RP11-319F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
372-389
0.016
2
6mer
346-367
0.011
1
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