LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-403H13.1
hsa-miR-375
0.745
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445708
Biotype: sense_intronic
Gene id: ENSG00000224972
Gene Name: RP11-403H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-193
0.028
3
AC005220.3
hsa-miR-375
0.744
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000450473
Biotype: antisense
Gene id: ENSG00000236352
Gene Name: AC005220.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
39-62
0.006
1
6mer
45-67
0.006
0
6mer
464-479
0.006
5
6mer
31-57
0.006
1
6mer
110-133
0.005
1
RP11-79E3.3
hsa-miR-375
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505018
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-455
0.023
4
6mer
657-678
0.003
1
6mer
1222-1244
0.002
1
AC079354.3
hsa-miR-375
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409819
Biotype: antisense
Gene id: ENSG00000222035
Gene Name: AC079354.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2295-2306
0.008
2
7mer
1324-1349
0.007
3
6mer
2347-2372
0.004
0
6mer
2301-2326
0.003
1
6mer
1144-1157
0.002
0
6mer
2188-2213
0.002
0
6mer
1774-1778
0.002
Not Conserved
6mer
1767-1771
0.001
0
LINC00094
hsa-miR-375
0.744
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000599836
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1555-1575
0.015
10
6mer
1555-1580
0.013
9
RP11-386B13.3
hsa-miR-375
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506338
Biotype: lincRNA
Gene id: ENSG00000250754
Gene Name: RP11-386B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-149
0.023
2
6mer
528-550
0.005
2
RP11-395I14.2
hsa-miR-375
0.743
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523840
Biotype: lincRNA
Gene id: ENSG00000253476
Gene Name: RP11-395I14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-34
0.028
1
PWRN2
hsa-miR-375
0.743
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026647.1
Biotype: lincRNA
Gene id: NR_026647.1 (gene)
Gene Name: PWRN2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
423-432
0.009
1
7mer
1134-1158
0.006
1
6mer
2665-2687
0.004
1
6mer
4785-4810
0.003
Not Conserved
6mer
1198-1223
0.003
0
6mer
1625-1651
0.002
Not Conserved
6mer
1444-1466
0.001
Not Conserved
XLOC_010249
hsa-miR-375
0.743
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020984
Biotype: transcript isomorph
Gene id: XLOC_010249
Gene Name: XLOC_010249
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-216
0.024
1
6mer
48-61
0.004
0
RP11-544M22.8
hsa-miR-375
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447167
Biotype: antisense
Gene id: ENSG00000228917
Gene Name: RP11-544M22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-156
0.021
4
6mer
141-161
0.007
5
LINC00320
hsa-miR-375
0.743
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_109788.1
Biotype: lincRNA
Gene id: NR_109788.1 (gene)
Gene Name: LINC00320
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1432-1457
0.012
Not Conserved
7mer
1306-1331
0.010
Not Conserved
6mer
334-353
0.004
1
6mer
1720-1736
0.002
0
RP4-686C3.7
hsa-miR-375
0.742
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000418739
Biotype: antisense
Gene id: ENSG00000228293
Gene Name: RP4-686C3.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
793-813
0.028
2
F11-AS1
hsa-miR-375
0.742
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_033900.1
Biotype: sense
Gene id: NR_033900.1 (gene)
Gene Name: F11-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
724-741
0.024
Not Conserved
6mer
572-587
0.003
1
6mer
551-574
0.002
2
GJA9-MYCBP
hsa-miR-375
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037637.1
Biotype: sense
Gene id: NR_037637.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1689-1703
0.016
3
7mer
1964-1972
0.008
0
6mer
831-846
0.003
0
XLOC_009251
hsa-miR-375
0.742
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019441
Biotype: transcript isomorph
Gene id: XLOC_009251
Gene Name: XLOC_009251
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-194
0.028
0
RP11-317P15.4
hsa-miR-375
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566297
Biotype: lincRNA
Gene id: ENSG00000261504
Gene Name: RP11-317P15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-187
0.016
1
7mer
854-879
0.012
4
LINC00987
hsa-miR-375
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000427111
Biotype: lincRNA
Gene id: ENSG00000237248
Gene Name: LINC00987
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2279-2303
0.010
6
6mer
2452-2471
0.007
2
6mer
2411-2415
0.007
2
6mer
605-625
0.003
0
RP11-159G9.5
hsa-miR-375
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000623596
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-308
0.028
7
KCNIP2-AS1
hsa-miR-375
0.741
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412353
Biotype: antisense
Gene id: ENSG00000226009
Gene Name: KCNIP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-158
0.028
1
XLOC_009243
hsa-miR-375
0.740
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019425
Biotype: transcript isomorph
Gene id: XLOC_009243
Gene Name: XLOC_009243
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
522-547
0.022
1
6mer
345-372
0.006
3
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