LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP1-225E12.3
hsa-miR-375
0.752
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000617538
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-149
0.014
1
6mer
185-207
0.010
11
6mer
384-409
0.006
4
RP11-281P23.1
hsa-miR-375
0.751
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515343
Biotype: lincRNA
Gene id: ENSG00000251152
Gene Name: RP11-281P23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3549-3561
0.005
1
6mer
3861-3887
0.005
1
6mer
3752-3775
0.003
Not Conserved
6mer
3898-3919
0.003
0
6mer
349-374
0.003
Not Conserved
6mer
3066-3089
0.003
0
6mer
2905-2925
0.003
0
6mer
2547-2570
0.002
0
6mer
2659-2682
0.001
Not Conserved
CTC-448F2.4
hsa-miR-375
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588402
Biotype: lincRNA
Gene id: ENSG00000267006
Gene Name: CTC-448F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-922
0.019
1
6mer
1126-1145
0.009
2
FLJ37201
hsa-miR-375
0.751
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000455699
Biotype: lincRNA
Gene id: ENSG00000240996
Gene Name: FLJ37201
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-151
0.015
1
6mer
384-409
0.005
0
6mer
574-588
0.005
0
6mer
199-213
0.004
1
RP11-734K2.4
hsa-miR-375
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000605233
Biotype: antisense
Gene id: ENSG00000270344
Gene Name: RP11-734K2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3033-3056
0.005
1
6mer
7703-7720
0.005
0
7mer
2019-2041
0.005
3
6mer
6047-6064
0.003
4
7mer
3058-3072
0.003
3
6mer
3556-3580
0.003
4
6mer
618-635
0.002
1
6mer
5742-5756
0.002
1
6mer
6515-6535
0.001
1
6mer
1785-1812
0.001
Not Conserved
RP11-320N21.1
hsa-miR-375
0.751
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501164
Biotype: antisense
Gene id: ENSG00000245080
Gene Name: RP11-320N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1830-1849
0.014
4
6mer
19-35
0.011
4
6mer
1368-1383
0.002
1
6mer
1276-1303
0.001
1
6mer
1229-1245
0.001
0
RP11-819C21.1
hsa-miR-375
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561746
Biotype: lincRNA
Gene id: ENSG00000261098
Gene Name: RP11-819C21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
442-467
0.022
1
6mer
109-113
0.007
1
RP11-196O2.1
hsa-miR-375
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000567497
Biotype: sense_overlapping
Gene id: ENSG00000261184
Gene Name: RP11-196O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
757-781
0.010
2
6mer
746-771
0.009
2
6mer
757-776
0.009
2
PRICKLE2-AS1
hsa-miR-375
0.750
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6357-6377
0.018
1
6mer
2037-2060
0.003
7
6mer
1822-1835
0.002
5
6mer
1007-1032
0.002
0
6mer
5247-5272
0.002
0
6mer
4893-4911
0.001
1
C5orf27
hsa-miR-375
0.750
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000357880
Biotype: lincRNA
Gene id: ENSG00000236882
Gene Name: C5orf27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-184
0.018
0
7mer
294-316
0.010
0
AC159540.1
hsa-miR-375
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596026
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
95-118
0.024
1
6mer
349-370
0.005
0
RP11-24P14.1
hsa-miR-375
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429080
Biotype: lincRNA
Gene id: ENSG00000233047
Gene Name: RP11-24P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-57
0.029
0
RP11-731D1.4
hsa-miR-375
0.750
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000603264
Biotype: lincRNA
Gene id: ENSG00000270265
Gene Name: RP11-731D1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-372
0.017
1
7mer
487-509
0.012
1
SMC2-AS1
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603487
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6441-6467
0.006
2
6mer
362-385
0.005
0
6mer
61-82
0.004
0
6mer
915-932
0.003
1
6mer
5398-5410
0.003
3
6mer
5077-5088
0.002
1
6mer
2156-2174
0.002
1
6mer
2403-2424
0.002
1
6mer
2393-2405
0.001
1
6mer
2398-2424
0.001
1
6mer
2387-2400
0.001
0
AF064858.7
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433952
Biotype: lincRNA
Gene id: ENSG00000232837
Gene Name: AF064858.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-269
0.029
7
XLOC_007612
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015778
Biotype: transcript isomorph
Gene id: XLOC_007612
Gene Name: XLOC_007612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1851-1863
0.006
0
6mer
1832-1858
0.005
0
6mer
1856-1868
0.005
Not Conserved
6mer
1827-1853
0.005
0
6mer
1861-1876
0.005
0
6mer
240-262
0.003
Not Conserved
RP11-8L2.1
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508406
Biotype: lincRNA
Gene id: ENSG00000250546
Gene Name: RP11-8L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-250
0.011
1
6mer
389-413
0.006
1
6mer
625-650
0.005
1
6mer
258-279
0.004
1
6mer
1107-1118
0.002
0
LINC01021
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512067
Biotype: lincRNA
Gene id: ENSG00000250337
Gene Name: LINC01021
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1417-1444
0.023
2
7mer
1226-1245
0.006
1
LINC00704
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443994
Biotype: lincRNA
Gene id: ENSG00000231298
Gene Name: LINC00704
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-21
0.029
1
CTA-797E19.2
hsa-miR-375
0.749
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526017
Biotype: antisense
Gene id: ENSG00000255539
Gene Name: CTA-797E19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-354
0.023
1
6mer
218-238
0.005
0
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