LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
SMAD1-AS2
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508936
Biotype: antisense
Gene id: ENSG00000250582
Gene Name: SMAD1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-485
0.015
1
7mer
813-836
0.014
1
RP11-61A14.3
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563086
Biotype: lincRNA
Gene id: ENSG00000261088
Gene Name: RP11-61A14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1387-1395
0.013
1
6mer
1759-1782
0.006
2
6mer
1073-1100
0.004
1
6mer
1385-1400
0.003
1
6mer
1109-1113
0.002
1
6mer
1096-1106
0.002
0
CTD-2544M6.2
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560195
Biotype: lincRNA
Gene id: ENSG00000259611
Gene Name: CTD-2544M6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-396
0.019
0
7mer
248-270
0.010
0
LINC00094
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603928
Biotype: antisense
Gene id: ENSG00000235106
Gene Name: LINC00094
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5149-5153
0.008
6
6mer
5171-5175
0.007
3
6mer
3919-3939
0.006
10
6mer
4287-4308
0.004
3
6mer
3919-3944
0.002
9
6mer
4294-4321
0.002
2
RP11-123M21.1
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546563
Biotype: lincRNA
Gene id: ENSG00000257948
Gene Name: RP11-123M21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-137
0.029
Not Conserved
RP11-154H17.1
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413887
Biotype: lincRNA
Gene id: ENSG00000236948
Gene Name: RP11-154H17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-94
0.022
1
6mer
16-36
0.007
1
LINC01227
hsa-miR-375
0.754
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561634
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
105-126
0.007
1
6mer
111-136
0.007
0
6mer
99-109
0.006
0
6mer
93-103
0.005
Not Conserved
6mer
423-442
0.004
1
LINC01227
hsa-miR-375
0.754
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562002
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
108-129
0.007
1
6mer
114-139
0.007
0
6mer
102-112
0.006
0
6mer
96-106
0.005
Not Conserved
6mer
435-454
0.004
1
RP11-325N19.3
hsa-miR-375
0.754
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558675
Biotype: lincRNA
Gene id: ENSG00000246863
Gene Name: RP11-325N19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3496-3520
0.010
1
7mer
407-430
0.008
0
7mer
1733-1755
0.006
1
6mer
2342-2366
0.002
0
6mer
1422-1441
0.002
0
6mer
2367-2371
0.001
1
6mer
2355-2376
0.001
1
DPH6-AS1
hsa-miR-375
0.754
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501169
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
948-968
0.023
6
6mer
652-673
0.006
6
RP11-295G20.2
hsa-miR-375
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416221
Biotype: antisense
Gene id: ENSG00000233461
Gene Name: RP11-295G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
323-349
0.029
0
RP11-508N22.12
hsa-miR-375
0.753
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1362-1381
0.011
1
7mer
4938-4964
0.009
0
6mer
1057-1082
0.004
1
6mer
5092-5096
0.003
1
6mer
1763-1780
0.002
0
6mer
4976-4991
0.001
0
RP11-251P6.1
hsa-miR-375
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595309
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
596-616
0.022
2
6mer
114-140
0.007
1
LINC00158
hsa-miR-375
0.753
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000440205
Biotype: lincRNA
Gene id: ENSG00000185433
Gene Name: LINC00158
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-701
0.029
1
RP11-817O13.8
hsa-miR-375
0.753
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563278
Biotype: lincRNA
Gene id: ENSG00000260274
Gene Name: RP11-817O13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1196-1208
0.020
1
6mer
1292-1315
0.005
0
6mer
1316-1331
0.004
Not Conserved
RP11-902B17.1
hsa-miR-375
0.752
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500036
Biotype: antisense
Gene id: ENSG00000247287
Gene Name: RP11-902B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
457-461
0.004
0
6mer
702-720
0.003
1
6mer
3813-3834
0.003
2
6mer
1219-1235
0.003
2
6mer
4049-4066
0.003
1
6mer
3016-3020
0.002
1
6mer
2051-2071
0.002
3
6mer
1490-1505
0.002
1
6mer
2482-2499
0.002
2
6mer
1915-1934
0.002
3
6mer
1129-1141
0.002
1
6mer
1467-1477
0.001
1
6mer
3011-3023
0.001
1
RP11-541F9.2
hsa-miR-375
0.752
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430776
Biotype: lincRNA
Gene id: ENSG00000228215
Gene Name: RP11-541F9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1738-1758
0.013
1
7mer
1694-1715
0.009
2
6mer
130-156
0.006
0
AC108004.3
hsa-miR-375
0.752
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000599026
Biotype: antisense
Gene id: ENSG00000241525
Gene Name: AC108004.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-254
0.012
0
7mer
413-438
0.006
1
6mer
173-192
0.006
1
6mer
449-472
0.005
2
RP11-426C22.5
hsa-miR-375
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562902
Biotype: lincRNA
Gene id: ENSG00000260517
Gene Name: RP11-426C22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
103-122
0.019
2
6mer
167-191
0.010
5
MIR155HG
hsa-miR-375
0.752
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000456917
Biotype: lincRNA
Gene id: ENSG00000234883
Gene Name: MIR155HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
490-512
0.024
5
6mer
243-264
0.005
1
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