LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-251P6.1
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000600656
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-453
0.023
2
6mer
233-259
0.006
1
RP11-517I3.1
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512500
Biotype: antisense
Gene id: ENSG00000250602
Gene Name: RP11-517I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-226
0.020
1
6mer
35-51
0.010
7
RP11-121G22.3
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550999
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-404
0.013
1
7mer
593-611
0.012
2
6mer
205-227
0.004
1
XLOC_004445
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009252
Biotype: transcript isomorph
Gene id: XLOC_004445
Gene Name: XLOC_004445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
384-406
0.020
2
6mer
817-821
0.003
2
6mer
1552-1571
0.002
2
6mer
767-790
0.002
0
6mer
864-882
0.002
2
CHRM3-AS1
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444721
Biotype: antisense
Gene id: ENSG00000234601
Gene Name: CHRM3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-78
0.025
3
6mer
177-204
0.005
2
XLOC_000507
hsa-miR-375
0.758
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000360
Biotype: transcript isomorph
Gene id: XLOC_000507
Gene Name: XLOC_000507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1722-1742
0.014
1
7mer
1678-1699
0.010
2
6mer
130-156
0.006
0
RP11-554A11.7
hsa-miR-375
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567925
Biotype: lincRNA
Gene id: ENSG00000260895
Gene Name: RP11-554A11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-140
0.029
3
XLOC_006059
hsa-miR-375
0.758
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012998
Biotype: transcript isomorph
Gene id: XLOC_006059
Gene Name: XLOC_006059
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-207
0.026
3
6mer
1489-1505
0.003
1
RP11-479J7.2
hsa-miR-375
0.758
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425271
Biotype: lincRNA
Gene id: ENSG00000229588
Gene Name: RP11-479J7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-214
0.022
4
6mer
86-106
0.007
2
LINC00320
hsa-miR-375
0.757
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416768
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1432-1457
0.013
Not Conserved
7mer
1306-1331
0.011
Not Conserved
6mer
334-353
0.004
1
6mer
1663-1679
0.002
0
XLOC_005201
hsa-miR-375
0.757
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012436
Biotype: transcript isomorph
Gene id: XLOC_005201
Gene Name: XLOC_005201
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-117
0.017
1
7mer
50-73
0.012
3
XLOC_001780
hsa-miR-375
0.757
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003963
Biotype: transcript isomorph
Gene id: XLOC_001780
Gene Name: XLOC_001780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
789-804
0.024
5
6mer
840-858
0.005
Not Conserved
RP4-535B20.1
hsa-miR-375
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000448344
Biotype: lincRNA
Gene id: ENSG00000231485
Gene Name: RP4-535B20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-233
0.029
7
XLOC_008402
hsa-miR-375
0.757
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018127
Biotype: transcript isomorph
Gene id: XLOC_008402
Gene Name: XLOC_008402
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
690-694
0.010
4
6mer
698-706
0.006
1
6mer
751-773
0.005
1
6mer
669-678
0.004
1
6mer
664-683
0.004
1
STL
hsa-miR-375
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026876.1
Biotype: antisense
Gene id: NR_026876.1 (gene)
Gene Name: STL
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4496-4520
0.013
2
6mer
422-440
0.005
1
6mer
1046-1064
0.003
0
6mer
1263-1289
0.003
2
6mer
2922-2937
0.002
3
6mer
1868-1894
0.002
1
6mer
2024-2047
0.001
Not Conserved
RP13-228J13.1
hsa-miR-375
0.756
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000412436
Biotype: antisense
Gene id: ENSG00000224216
Gene Name: RP13-228J13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-72
0.024
1
6mer
982-986
0.005
0
LINC00320
hsa-miR-375
0.756
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000437238
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1547-1572
0.013
Not Conserved
7mer
1301-1326
0.011
Not Conserved
6mer
329-348
0.004
1
6mer
1778-1794
0.002
0
RP11-251P6.1
hsa-miR-375
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597635
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
557-577
0.023
2
6mer
228-254
0.007
1
RP11-651P23.5
hsa-miR-375
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000323689
Biotype: lincRNA
Gene id: ENSG00000242791
Gene Name: RP11-651P23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-76
0.022
2
6mer
63-88
0.007
1
FLJ46284
hsa-miR-375
0.755
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000504861
Biotype: antisense
Gene id: ENSG00000248858
Gene Name: FLJ46284
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3325-3329
0.010
5
6mer
161-176
0.007
5
6mer
262-285
0.005
1
6mer
396-412
0.004
1
6mer
3195-3214
0.004
1
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