LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
TTTY10
hsa-miR-375
0.762
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
358-378
0.015
0
6mer
1106-1126
0.014
0
TPTEP1
hsa-miR-375
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5592-5596
0.010
1
6mer
5601-5615
0.008
1
6mer
1190-1210
0.003
0
6mer
3175-3179
0.002
0
6mer
22-41
0.002
Not Conserved
6mer
3354-3377
0.002
0
6mer
1985-2007
0.001
0
6mer
3869-3884
0.001
Not Conserved
AC013394.2
hsa-miR-375
0.762
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554133
Biotype: retained_intron
Gene id: ENSG00000272888
Gene Name: AC013394.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1174-1192
0.014
4
7mer
69-84
0.011
3
6mer
926-950
0.004
7
RP11-88H12.2
hsa-miR-375
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602316
Biotype: sense_intronic
Gene id: ENSG00000270059
Gene Name: RP11-88H12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2-23
0.011
10
6mer
152-164
0.005
2
6mer
167-194
0.005
0
6mer
157-184
0.005
2
6mer
162-184
0.004
0
RP11-605F20.1
hsa-miR-375
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582101
Biotype: lincRNA
Gene id: ENSG00000264488
Gene Name: RP11-605F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
200-224
0.030
1
C10orf32-ASMT
hsa-miR-375
0.761
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_037644.1
Biotype: sense
Gene id: NR_037644.1 (gene)
Gene Name: C10orf32-ASMT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2659-2677
0.017
0
6mer
2704-2720
0.007
3
6mer
2572-2592
0.005
4
XLOC_007043
hsa-miR-375
0.761
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014557
Biotype: transcript isomorph
Gene id: XLOC_007043
Gene Name: XLOC_007043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1668-1683
0.021
3
7mer
1103-1123
0.008
1
XLOC_009404
hsa-miR-375
0.761
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019601
Biotype: transcript isomorph
Gene id: XLOC_009404
Gene Name: XLOC_009404
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2105-2124
0.021
5
6mer
2178-2204
0.005
Not Conserved
6mer
1248-1274
0.003
0
RP11-17A4.2
hsa-miR-375
0.761
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518662
Biotype: antisense
Gene id: ENSG00000254254
Gene Name: RP11-17A4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1873-1896
0.012
0
7mer
1983-2010
0.005
0
6mer
2573-2593
0.005
0
6mer
2272-2285
0.004
0
7mer
1443-1466
0.002
0
6mer
1349-1366
0.001
0
XLOC_001070
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000655
Biotype: transcript isomorph
Gene id: XLOC_001070
Gene Name: XLOC_001070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-672
0.020
3
6mer
755-781
0.005
3
6mer
413-433
0.004
1
RP11-589B3.6
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429070
Biotype: lincRNA
Gene id: ENSG00000226676
Gene Name: RP11-589B3.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-27
0.030
2
RP11-567C20.3
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440897
Biotype: antisense
Gene id: ENSG00000233407
Gene Name: RP11-567C20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-242
0.030
7
LINC01165
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445190
Biotype: antisense
Gene id: ENSG00000229081
Gene Name: LINC01165
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
59-72
0.030
2
RP11-350J20.5
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000622897
Biotype: antisense
Gene id: ENSG00000231760
Gene Name: RP11-350J20.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-448
0.030
4
CHRM3-AS1
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046582.1
Biotype: antisense
Gene id: NR_046582.1 (gene)
Gene Name: CHRM3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-75
0.025
3
6mer
174-201
0.005
2
RP11-410D17.2
hsa-miR-375
0.760
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000500117
Biotype: lincRNA
Gene id: ENSG00000245768
Gene Name: RP11-410D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-184
0.019
Not Conserved
6mer
2011-2036
0.007
4
6mer
284-305
0.004
0
KRBOX1-AS1
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447834
Biotype: antisense
Gene id: ENSG00000206552
Gene Name: KRBOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-498
0.012
1
7mer
564-576
0.011
1
6mer
70-97
0.006
1
RP5-1011O1.3
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457321
Biotype: lincRNA
Gene id: ENSG00000236069
Gene Name: RP5-1011O1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
480-500
0.017
0
7mer
377-395
0.010
1
6mer
480-505
0.003
0
XLOC_012419
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025589
Biotype: transcript isomorph
Gene id: XLOC_012419
Gene Name: XLOC_012419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
634-646
0.026
Not Conserved
6mer
866-880
0.003
Not Conserved
RP5-1074L1.4
hsa-miR-375
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609909
Biotype: antisense
Gene id: ENSG00000273373
Gene Name: RP5-1074L1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2377-2401
0.017
1
7mer
2434-2460
0.007
1
6mer
2709-2728
0.004
1
6mer
1574-1598
0.002
0
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