LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-467D6.1
hsa-miR-375
0.766
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000569710
Biotype: antisense
Gene id: ENSG00000259826
Gene Name: RP11-467D6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2046-2063
0.009
3
7mer
436-452
0.008
1
6mer
241-255
0.005
1
6mer
578-601
0.004
1
6mer
1763-1777
0.004
1
XLOC_005808
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012253
Biotype: transcript isomorph
Gene id: XLOC_005808
Gene Name: XLOC_005808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-89
0.015
4
6mer
1178-1201
0.006
5
6mer
311-329
0.004
1
6mer
510-534
0.004
2
6mer
694-709
0.001
Not Conserved
NAV2-AS3
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534036
Biotype: antisense
Gene id: ENSG00000254542
Gene Name: NAV2-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
282-299
0.030
6
AC093901.1
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414886
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
497-521
0.012
12
7mer
328-348
0.010
1
6mer
679-705
0.005
5
6mer
371-386
0.003
0
CTD-2583P5.3
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569407
Biotype: antisense
Gene id: ENSG00000261158
Gene Name: CTD-2583P5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-168
0.021
2
6mer
521-546
0.009
6
AC087430.1
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451707
Biotype: lincRNA
Gene id: ENSG00000235158
Gene Name: AC087430.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3307-3333
0.005
4
6mer
3242-3251
0.005
3
6mer
3336-3356
0.005
1
6mer
3336-3350
0.004
1
6mer
612-633
0.003
1
6mer
2762-2773
0.003
1
6mer
2418-2439
0.002
0
6mer
2575-2598
0.002
1
RP11-202D1.2
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565170
Biotype: lincRNA
Gene id: ENSG00000260433
Gene Name: RP11-202D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
215-230
0.007
2
6mer
210-230
0.005
1
6mer
512-521
0.005
2
6mer
233-252
0.005
1
6mer
254-280
0.004
0
6mer
228-252
0.004
1
XLOC_011339
hsa-miR-375
0.765
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023996
Biotype: transcript isomorph
Gene id: XLOC_011339
Gene Name: XLOC_011339
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
230-257
0.017
10
6mer
35-59
0.005
0
6mer
45-64
0.005
Not Conserved
6mer
31-54
0.004
0
XLOC_014244
hsa-miR-375
0.764
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029809
Biotype: transcript isomorph
Gene id: XLOC_014244
Gene Name: XLOC_014244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1308-1325
0.024
0
6mer
832-845
0.006
1
XLOC_010943
hsa-miR-375
0.764
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022641
Biotype: transcript isomorph
Gene id: XLOC_010943
Gene Name: XLOC_010943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-335
0.023
1
6mer
16-39
0.007
0
RP11-557L19.1
hsa-miR-375
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606959
Biotype: lincRNA
Gene id: ENSG00000272002
Gene Name: RP11-557L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-506
0.021
Not Conserved
6mer
438-461
0.008
1
DLG1-AS1
hsa-miR-375
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000430666
Biotype: antisense
Gene id: ENSG00000227375
Gene Name: DLG1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-105
0.009
1
6mer
1660-1687
0.008
1
6mer
1688-1692
0.008
1
7mer
719-743
0.005
0
RP11-24P14.1
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417385
Biotype: lincRNA
Gene id: ENSG00000233047
Gene Name: RP11-24P14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-56
0.030
0
RP11-315E17.1
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550272
Biotype: antisense
Gene id: ENSG00000258162
Gene Name: RP11-315E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-552
0.013
Not Conserved
6mer
564-568
0.006
2
6mer
525-537
0.006
0
6mer
525-542
0.005
0
RNF217-AS1
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000439075
Biotype: antisense
Gene id: ENSG00000236548
Gene Name: RNF217-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3646-3670
0.013
2
6mer
196-214
0.005
0
6mer
413-439
0.005
2
6mer
1018-1044
0.003
1
6mer
2072-2087
0.002
3
6mer
1174-1197
0.002
Not Conserved
RP11-1006G14.4
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566291
Biotype: sense_overlapping
Gene id: ENSG00000260534
Gene Name: RP11-1006G14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2101-2122
0.020
2
7mer
431-452
0.010
2
RP11-174G6.5
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562691
Biotype: sense_overlapping
Gene id: ENSG00000261324
Gene Name: RP11-174G6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
412-437
0.005
0
6mer
5268-5290
0.005
1
6mer
4689-4713
0.005
1
6mer
582-607
0.004
0
7mer
3749-3769
0.004
1
7mer
3601-3622
0.003
1
6mer
2541-2567
0.002
0
6mer
1068-1084
0.002
0
RP11-485G4.2
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4103-4126
0.011
3
6mer
429-433
0.005
0
6mer
3581-3607
0.004
0
6mer
731-754
0.003
1
6mer
3575-3585
0.002
0
6mer
3555-3559
0.002
0
6mer
3569-3579
0.002
Not Conserved
6mer
3563-3573
0.002
Not Conserved
LOC101927446
hsa-miR-375
0.763
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110085.1
Biotype: sense
Gene id: NR_110085.1 (gene)
Gene Name: LOC101927446
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-283
0.012
0
7mer
1236-1259
0.009
3
6mer
2104-2127
0.007
3
6mer
2169-2195
0.002
0
XLOC_005273
hsa-miR-375
0.762
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011799
Biotype: transcript isomorph
Gene id: XLOC_005273
Gene Name: XLOC_005273
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-214
0.030
2
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