LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-385J1.2
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000425330
Biotype: antisense
Gene id: ENSG00000237978
Gene Name: RP11-385J1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-37
0.030
1
RP11-121G22.3
hsa-miR-375
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547762
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-297
0.013
1
7mer
486-504
0.012
2
6mer
98-120
0.005
1
PDZRN3-AS1
hsa-miR-375
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608304
Biotype: antisense
Gene id: ENSG00000239677
Gene Name: PDZRN3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-69
0.012
2
6mer
683-695
0.006
1
6mer
648-673
0.005
0
6mer
671-685
0.004
0
6mer
671-690
0.004
0
RP11-297L17.4
hsa-miR-375
0.769
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564331
Biotype: lincRNA
Gene id: ENSG00000261261
Gene Name: RP11-297L17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-87
0.030
10
XLOC_008435
hsa-miR-375
0.769
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018705
Biotype: transcript isomorph
Gene id: XLOC_008435
Gene Name: XLOC_008435
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1885-1910
0.022
1
6mer
308-332
0.004
0
6mer
2249-2268
0.004
0
6mer
1288-1307
0.001
Not Conserved
LINC00320
hsa-miR-375
0.769
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419299
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-182
0.016
Not Conserved
7mer
437-462
0.013
Not Conserved
6mer
668-684
0.002
0
XLOC_012708
hsa-miR-375
0.768
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026355
Biotype: transcript isomorph
Gene id: XLOC_012708
Gene Name: XLOC_012708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
789-813
0.025
1
6mer
537-554
0.005
0
XLOC_014162
hsa-miR-375
0.768
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029320
Biotype: transcript isomorph
Gene id: XLOC_014162
Gene Name: XLOC_014162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1657-1679
0.007
3
6mer
5377-5389
0.006
1
6mer
5372-5384
0.006
1
6mer
5354-5379
0.006
1
6mer
5348-5374
0.006
1
SNHG14
hsa-miR-375
0.768
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7868-7889
0.013
2
7mer
3997-4011
0.007
3
6mer
7642-7662
0.003
1
6mer
3413-3428
0.002
1
6mer
1551-1570
0.002
1
6mer
5296-5308
0.002
1
6mer
2419-2438
0.001
1
XLOC_012843
hsa-miR-375
0.768
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026206
Biotype: transcript isomorph
Gene id: XLOC_012843
Gene Name: XLOC_012843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
214-229
0.007
2
6mer
209-229
0.005
1
6mer
511-520
0.005
2
6mer
232-251
0.005
1
6mer
253-279
0.004
0
6mer
227-251
0.004
1
XLOC_004144
hsa-miR-375
0.768
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008639
Biotype: transcript isomorph
Gene id: XLOC_004144
Gene Name: XLOC_004144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
600-621
0.027
5
6mer
2936-2952
0.002
1
6mer
1887-1914
0.001
1
RP11-545I5.3
hsa-miR-375
0.768
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606388
Biotype: antisense
Gene id: ENSG00000235652
Gene Name: RP11-545I5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3913-3938
0.007
1
6mer
3921-3946
0.006
1
6mer
3251-3268
0.004
1
6mer
608-626
0.003
1
6mer
1893-1913
0.003
2
6mer
3093-3113
0.003
1
6mer
2345-2356
0.002
3
6mer
2009-2032
0.002
4
RP11-436I24.1
hsa-miR-375
0.767
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027114.2
Biotype: antisense
Gene id: NR_027114.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
876-890
0.011
5
7mer
768-782
0.004
1
6mer
1451-1475
0.004
1
6mer
544-566
0.004
0
6mer
211-233
0.003
Not Conserved
6mer
892-914
0.003
1
PPEF1-AS1
hsa-miR-375
0.767
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430641
Biotype: antisense
Gene id: ENSG00000237221
Gene Name: PPEF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
402-423
0.015
0
6mer
391-418
0.009
5
6mer
44-64
0.006
2
XLOC_005182
hsa-miR-375
0.767
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011703
Biotype: transcript isomorph
Gene id: XLOC_005182
Gene Name: XLOC_005182
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1398-1421
0.020
4
7mer
1144-1164
0.011
1
RP11-474I16.8
hsa-miR-375
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431097
Biotype: antisense
Gene id: ENSG00000226889
Gene Name: RP11-474I16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-346
0.020
3
6mer
87-107
0.005
1
6mer
429-455
0.005
3
LINC00669
hsa-miR-375
0.767
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591469
Biotype: lincRNA
Gene id: ENSG00000267374
Gene Name: LINC00669
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-480
0.015
3
6mer
651-673
0.009
8
6mer
358-382
0.003
2
6mer
883-904
0.003
1
SERTAD4-AS1
hsa-miR-375
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024337.1
Biotype: antisense
Gene id: NR_024337.1 (gene)
Gene Name: SERTAD4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
768-789
0.023
9
6mer
219-237
0.007
3
PCGEM1
hsa-miR-375
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454040
Biotype: lincRNA
Gene id: ENSG00000227418
Gene Name: PCGEM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
934-942
0.008
1
6mer
1541-1567
0.008
2
6mer
1244-1266
0.006
2
6mer
627-640
0.005
4
6mer
1381-1399
0.003
1
RP11-764K9.1
hsa-miR-375
0.766
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-40
0.020
0
6mer
1667-1682
0.007
0
6mer
448-473
0.002
Not Conserved
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