LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_000757
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001441
Biotype: transcript isomorph
Gene id: XLOC_000757
Gene Name: XLOC_000757
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-580
0.028
1
6mer
1455-1470
0.003
Not Conserved
RP11-597M12.1
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582915
Biotype: antisense
Gene id: ENSG00000263707
Gene Name: RP11-597M12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-233
0.023
5
6mer
244-271
0.008
5
XLOC_008063
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017243
Biotype: transcript isomorph
Gene id: XLOC_008063
Gene Name: XLOC_008063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4490-4510
0.020
2
7mer
3127-3151
0.006
Not Conserved
7mer
3547-3571
0.005
0
6mer
3238-3258
0.001
Not Conserved
RP11-356O9.1
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554829
Biotype: lincRNA
Gene id: ENSG00000258414
Gene Name: RP11-356O9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
58-69
0.015
9
6mer
399-419
0.009
6
6mer
125-150
0.006
2
XLOC_011740
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024424
Biotype: transcript isomorph
Gene id: XLOC_011740
Gene Name: XLOC_011740
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
219-244
0.017
3
8mer
3396-3407
0.004
Not Conserved
6mer
287-310
0.003
1
7mer
3935-3954
0.003
0
6mer
3262-3289
0.002
Not Conserved
6mer
3270-3294
0.001
0
RP11-822E23.8
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000468381
Biotype: processed_transcript
Gene id: ENSG00000272780
Gene Name: RP11-822E23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-45
0.031
0
RP11-202G11.2
hsa-miR-375
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551928
Biotype: lincRNA
Gene id: ENSG00000257746
Gene Name: RP11-202G11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-395
0.031
6
RP11-94L15.2
hsa-miR-375
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5869-5887
0.022
6
7mer
3014-3034
0.003
0
6mer
4002-4027
0.002
1
6mer
4550-4570
0.001
Not Conserved
6mer
4308-4323
0.001
2
6mer
4400-4422
0.001
0
6mer
3996-4022
0.001
0
RP11-265N7.1
hsa-miR-375
0.771
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560743
Biotype: lincRNA
Gene id: ENSG00000259450
Gene Name: RP11-265N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1397-1418
0.021
0
7mer
1455-1471
0.010
1
XLOC_000626
hsa-miR-375
0.771
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000071
Biotype: transcript isomorph
Gene id: XLOC_000626
Gene Name: XLOC_000626
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3400-3413
0.010
4
6mer
110-133
0.008
4
6mer
3188-3203
0.007
4
7mer
1112-1133
0.003
0
6mer
955-977
0.002
0
RP11-456O19.4
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587904
Biotype: lincRNA
Gene id: ENSG00000267712
Gene Name: RP11-456O19.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
51-67
0.018
12
7mer
1430-1448
0.009
1
6mer
1936-1956
0.003
1
CTB-113D17.1
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608972
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1278-1285
0.026
2
6mer
783-808
0.004
1
RP11-196G18.3
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428289
Biotype: antisense
Gene id: ENSG00000233030
Gene Name: RP11-196G18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-348
0.016
1
6mer
423-442
0.004
0
6mer
1228-1247
0.003
2
6mer
750-768
0.003
1
6mer
2753-2780
0.003
1
6mer
1923-1940
0.001
0
XLOC_010453
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021859
Biotype: transcript isomorph
Gene id: XLOC_010453
Gene Name: XLOC_010453
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-221
0.021
0
7mer
330-352
0.009
0
RP11-344E13.3
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577860
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-601
0.025
0
6mer
418-436
0.005
0
F11-AS1
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505103
Biotype: antisense
Gene id: ENSG00000251165
Gene Name: F11-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-745
0.026
Not Conserved
6mer
576-591
0.003
1
6mer
555-578
0.002
2
ALKBH3-AS1
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527960
Biotype: antisense
Gene id: ENSG00000244926
Gene Name: ALKBH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-64
0.030
5
RP11-43N5.1
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542219
Biotype: lincRNA
Gene id: ENSG00000255970
Gene Name: RP11-43N5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2634-2658
0.009
0
6mer
221-241
0.006
4
6mer
281-290
0.005
3
6mer
2897-2916
0.003
Not Conserved
6mer
2342-2356
0.003
0
6mer
506-531
0.002
1
6mer
2337-2356
0.002
0
BVES-AS1
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000369122
Biotype: antisense
Gene id: ENSG00000203808
Gene Name: BVES-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1692-1710
0.022
1
6mer
1692-1715
0.005
2
6mer
828-845
0.003
1
AC104534.2
hsa-miR-375
0.770
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594558
Biotype: antisense
Gene id: ENSG00000268756
Gene Name: AC104534.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
523-546
0.015
0
7mer
499-521
0.015
0
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