LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
LOC339166
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_040000.1
Biotype: sense
Gene id: NR_040000.1 (gene)
Gene Name: LOC339166
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-267
0.012
Not Conserved
7mer
140-162
0.010
0
7mer
374-398
0.009
0
CTD-2314G24.2
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000601500
Biotype: antisense
Gene id: ENSG00000259663
Gene Name: CTD-2314G24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
327-353
0.011
1
7mer
2639-2657
0.008
0
7mer
3517-3543
0.006
1
6mer
391-408
0.004
1
6mer
3907-3926
0.002
1
6mer
4969-4988
0.001
1
RP11-575F12.1
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000512624
Biotype: lincRNA
Gene id: ENSG00000249345
Gene Name: RP11-575F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-109
0.018
0
7mer
937-957
0.013
1
RP11-348J24.2
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-441
0.028
1
6mer
1937-1949
0.003
2
XLOC_002746
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006143
Biotype: transcript isomorph
Gene id: XLOC_002746
Gene Name: XLOC_002746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1631-1651
0.006
1
6mer
8841-8861
0.004
2
7mer
6471-6482
0.004
2
6mer
9357-9374
0.004
1
6mer
2799-2819
0.002
3
6mer
1098-1113
0.002
1
6mer
5755-5775
0.002
1
6mer
3979-4001
0.002
4
6mer
3728-3749
0.002
1
6mer
7607-7626
0.002
3
LOC388692
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-67
0.023
0
7mer
2118-2135
0.003
1
6mer
10004-10021
0.002
0
6mer
6601-6626
0.002
0
6mer
4806-4824
0.001
0
XLOC_012006
hsa-miR-375
0.775
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024726
Biotype: transcript isomorph
Gene id: XLOC_012006
Gene Name: XLOC_012006
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1077-1104
0.031
6
LINC00969
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445430
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4180-4207
0.031
0
RP11-475O6.1
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417975
Biotype: lincRNA
Gene id: ENSG00000233008
Gene Name: RP11-475O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
335-352
0.016
1
7mer
897-914
0.008
0
7mer
2331-2357
0.003
0
6mer
1852-1862
0.002
0
6mer
1601-1622
0.002
0
RP11-305D15.8
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613946
Biotype: antisense
Gene id: ENSG00000277684
Gene Name: RP11-305D15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8-16
0.031
1
RP11-545I5.3
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038246.1
Biotype: antisense
Gene id: NR_038246.1 (gene)
Gene Name: RP11-545I5.3
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3481-3506
0.007
1
6mer
3489-3514
0.006
1
6mer
176-194
0.004
1
6mer
2819-2836
0.004
1
6mer
1461-1481
0.003
2
6mer
2661-2681
0.003
1
6mer
1913-1924
0.002
3
6mer
1577-1600
0.002
4
RP11-751H17.1
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584843
Biotype: lincRNA
Gene id: ENSG00000265844
Gene Name: RP11-751H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-66
0.031
2
GRIK1-AS1
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455392
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
533-548
0.016
2
7mer
181-198
0.006
0
6mer
681-707
0.006
0
6mer
530-553
0.003
1
BAALC-AS1
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499522
Biotype: antisense
Gene id: ENSG00000247081
Gene Name: BAALC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-382
0.014
1
7mer
310-324
0.007
1
7mer
148-173
0.006
Not Conserved
6mer
564-587
0.004
1
XLOC_002943
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005675
Biotype: transcript isomorph
Gene id: XLOC_002943
Gene Name: XLOC_002943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-548
0.014
2
7mer
538-563
0.014
1
6mer
196-215
0.003
2
DNAJC27-AS1
hsa-miR-375
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434897
Biotype: antisense
Gene id: ENSG00000224165
Gene Name: DNAJC27-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4612-4638
0.028
1
6mer
3236-3263
0.001
1
6mer
2895-2915
0.001
0
RP11-768B22.2
hsa-miR-375
0.773
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515789
Biotype: antisense
Gene id: ENSG00000248571
Gene Name: RP11-768B22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-112
0.018
1
6mer
2112-2121
0.005
1
6mer
983-1008
0.004
3
6mer
1855-1879
0.004
1
RP11-142G1.1
hsa-miR-375
0.773
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568286
Biotype: lincRNA
Gene id: ENSG00000260478
Gene Name: RP11-142G1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-522
0.031
3
RP11-1018N14.5
hsa-miR-375
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592081
Biotype: lincRNA
Gene id: ENSG00000267452
Gene Name: RP11-1018N14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-145
0.031
2
XLOC_000824
hsa-miR-375
0.773
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001488
Biotype: transcript isomorph
Gene id: XLOC_000824
Gene Name: XLOC_000824
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-149
0.025
1
6mer
119-129
0.006
0
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