LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP1-68D18.2
hsa-miR-375
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000510619
Biotype: sense_intronic
Gene id: ENSG00000251194
Gene Name: RP1-68D18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
515-531
0.031
6
HCG18
hsa-miR-375
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602319
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10-28
0.007
1
6mer
185-208
0.006
0
6mer
60-75
0.006
1
6mer
498-521
0.004
1
6mer
614-632
0.004
0
6mer
590-606
0.004
1
RP11-575F12.1
hsa-miR-375
0.778
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_104646.1
Biotype: lincRNA
Gene id: NR_104646.1 (gene)
Gene Name: RP11-575F12.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.019
0
7mer
913-933
0.013
1
RP11-327P2.5
hsa-miR-375
0.778
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456688
Biotype: antisense
Gene id: ENSG00000231856
Gene Name: RP11-327P2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
615-632
0.013
1
7mer
689-708
0.010
1
7mer
677-699
0.008
1
RP11-783K16.5
hsa-miR-375
0.778
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000544553
Biotype: antisense
Gene id: ENSG00000256940
Gene Name: RP11-783K16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-294
0.025
3
6mer
339-355
0.006
1
LINC01088
hsa-miR-375
0.778
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507761
Biotype: antisense
Gene id: ENSG00000249307
Gene Name: LINC01088
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-213
0.024
0
6mer
176-191
0.008
0
RP11-521O16.2
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564121
Biotype: lincRNA
Gene id: ENSG00000260163
Gene Name: RP11-521O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4433-4451
0.011
2
7mer
2944-2957
0.009
2
7mer
2666-2683
0.007
0
6mer
2267-2284
0.002
1
6mer
1720-1743
0.002
Not Conserved
LOC100505658
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038333.1
Biotype: antisense
Gene id: NR_038333.1 (gene)
Gene Name: LOC100505658
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-251
0.014
2
7mer
1310-1336
0.009
0
6mer
1874-1899
0.005
3
6mer
1901-1911
0.003
1
LINC00861
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522865
Biotype: lincRNA
Gene id: ENSG00000245164
Gene Name: LINC00861
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
199-224
0.021
0
6mer
140-163
0.006
1
6mer
87-111
0.004
1
FLJ46284
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_046114.1
Biotype: lincRNA
Gene id: NR_046114.1 (gene)
Gene Name: FLJ46284
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3325-3329
0.011
5
6mer
161-176
0.007
5
6mer
3195-3214
0.005
1
6mer
262-285
0.005
1
6mer
396-412
0.004
1
XLOC_010541
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022236
Biotype: transcript isomorph
Gene id: XLOC_010541
Gene Name: XLOC_010541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-43
0.031
1
RP1-301L19.1
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000612841
Biotype: antisense
Gene id: ENSG00000225683
Gene Name: RP1-301L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
890-914
0.015
3
7mer
214-222
0.012
1
6mer
1287-1301
0.004
1
RP11-26J3.3
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606512
Biotype: sense_intronic
Gene id: ENSG00000272518
Gene Name: RP11-26J3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-638
0.015
1
6mer
870-895
0.010
1
6mer
58-77
0.006
0
CTD-2024I7.13
hsa-miR-375
0.777
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502205
Biotype: antisense
Gene id: ENSG00000246422
Gene Name: CTD-2024I7.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-251
0.014
2
7mer
1310-1336
0.009
0
6mer
1874-1899
0.004
3
6mer
1901-1911
0.003
1
XLOC_013573
hsa-miR-375
0.776
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027956
Biotype: transcript isomorph
Gene id: XLOC_013573
Gene Name: XLOC_013573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-295
0.017
1
6mer
1370-1394
0.006
1
6mer
619-623
0.005
1
6mer
943-964
0.003
1
MIR222HG
hsa-miR-375
0.776
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602461
Biotype: lincRNA
Gene id: ENSG00000270069
Gene Name: MIR222HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
992-1009
0.031
9
MIR155HG
hsa-miR-375
0.776
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_001458.3
Biotype: lincRNA
Gene id: NR_001458.3 (gene)
Gene Name: MIR155HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-386
0.026
5
6mer
117-138
0.005
1
RP11-325E5.1
hsa-miR-375
0.776
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557910
Biotype: lincRNA
Gene id: ENSG00000259656
Gene Name: RP11-325E5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
33-60
0.012
8
6mer
463-467
0.005
1
6mer
468-472
0.005
0
6mer
425-452
0.005
1
6mer
456-460
0.004
0
ALKBH3-AS1
hsa-miR-375
0.776
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499194
Biotype: antisense
Gene id: ENSG00000244926
Gene Name: ALKBH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1779-1800
0.027
5
6mer
922-933
0.004
1
RP1-225E12.3
hsa-miR-375
0.776
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616537
Biotype: processed_transcript
Gene id: ENSG00000272446
Gene Name: RP1-225E12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-162
0.011
1
6mer
1052-1075
0.010
10
6mer
272-294
0.010
11
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