LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
RP11-369C8.1
hsa-miR-375
0.786
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555442
Biotype: lincRNA
Gene id: ENSG00000258616
Gene Name: RP11-369C8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-188
0.015
3
7mer
666-685
0.012
1
6mer
142-158
0.005
2
HAND2-AS1
hsa-miR-375
0.786
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2360-2377
0.014
1
7mer
647-667
0.008
0
7mer
508-523
0.007
0
6mer
872-882
0.002
2
XLOC_009839
hsa-miR-375
0.786
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020522
Biotype: transcript isomorph
Gene id: XLOC_009839
Gene Name: XLOC_009839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
30-48
0.028
6
6mer
345-371
0.004
Not Conserved
AC018737.3
hsa-miR-375
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435895
Biotype: lincRNA
Gene id: ENSG00000224655
Gene Name: AC018737.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-419
0.032
4
RP11-1008C21.2
hsa-miR-375
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560819
Biotype: lincRNA
Gene id: ENSG00000236914
Gene Name: RP11-1008C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-47
0.019
Not Conserved
6mer
49-72
0.008
3
6mer
414-441
0.004
3
XLOC_006195
hsa-miR-375
0.785
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012887
Biotype: transcript isomorph
Gene id: XLOC_006195
Gene Name: XLOC_006195
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-167
0.018
0
8mer
48-65
0.014
Not Conserved
RP11-1008C21.2
hsa-miR-375
0.785
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000434223
Biotype: lincRNA
Gene id: ENSG00000236914
Gene Name: RP11-1008C21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-47
0.024
Not Conserved
6mer
49-72
0.008
3
RP11-133K1.11
hsa-miR-375
0.785
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000613987
Biotype: sense_intronic
Gene id: ENSG00000273786
Gene Name: RP11-133K1.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-166
0.017
2
7mer
37-51
0.015
0
XLOC_011117
hsa-miR-375
0.785
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022385
Biotype: transcript isomorph
Gene id: XLOC_011117
Gene Name: XLOC_011117
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1004-1027
0.008
0
6mer
9-35
0.007
0
7mer
5105-5131
0.007
0
7mer
953-976
0.005
Not Conserved
6mer
3984-4005
0.002
1
6mer
1625-1652
0.002
1
6mer
2318-2342
0.001
1
HAND2-AS1
hsa-miR-375
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616485
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2357-2374
0.014
1
7mer
644-664
0.008
0
7mer
505-520
0.007
0
6mer
869-879
0.002
2
CTC-260E6.6
hsa-miR-375
0.785
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585816
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-183
0.024
0
6mer
450-465
0.008
0
RP11-757G1.6
hsa-miR-375
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3215-3242
0.017
0
6mer
2781-2804
0.015
0
XLOC_009231
hsa-miR-375
0.784
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019958
Biotype: transcript isomorph
Gene id: XLOC_009231
Gene Name: XLOC_009231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-153
0.014
1
7mer
449-466
0.011
1
6mer
792-811
0.003
0
6mer
600-622
0.003
0
RP11-203B9.4
hsa-miR-375
0.784
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589394
Biotype: antisense
Gene id: ENSG00000226803
Gene Name: RP11-203B9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
440-461
0.032
3
XLOC_012313
hsa-miR-375
0.784
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025498
Biotype: transcript isomorph
Gene id: XLOC_012313
Gene Name: XLOC_012313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-168
0.020
0
7mer
275-299
0.012
0
LINC00547
hsa-miR-375
0.783
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000612438
Biotype: lincRNA
Gene id: ENSG00000275226
Gene Name: LINC00547
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1273-1300
0.008
1
6mer
3020-3045
0.006
1
6mer
3043-3069
0.006
1
6mer
3047-3062
0.005
1
6mer
3047-3056
0.004
Not Conserved
6mer
933-950
0.003
1
RP11-404O13.5
hsa-miR-375
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415019
Biotype: lincRNA
Gene id: ENSG00000176320
Gene Name: RP11-404O13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-343
0.016
1
6mer
517-540
0.006
1
6mer
433-442
0.004
1
6mer
312-331
0.003
1
6mer
398-415
0.003
1
LUCAT1
hsa-miR-375
0.783
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511918
Biotype: lincRNA
Gene id: ENSG00000248323
Gene Name: LUCAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-250
0.026
4
6mer
567-578
0.006
2
TBL1XR1-AS1
hsa-miR-375
0.782
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000617758
Biotype: antisense
Gene id: ENSG00000231310
Gene Name: TBL1XR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-427
0.012
2
7mer
510-525
0.010
1
7mer
124-148
0.009
0
LL22NC03-86D4.1
hsa-miR-375
0.782
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412218
Biotype: lincRNA
Gene id: ENSG00000236052
Gene Name: LL22NC03-86D4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-33
0.032
2
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