LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XXbac-BPG13B8.10
hsa-miR-375
0.800
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436804
Biotype: lincRNA
Gene id: ENSG00000229274
Gene Name: XXbac-BPG13B8.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-242
0.033
1
XLOC_011349
hsa-miR-375
0.800
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023239
Biotype: transcript isomorph
Gene id: XLOC_011349
Gene Name: XLOC_011349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1243-1270
0.007
0
6mer
1054-1077
0.006
0
6mer
1093-1097
0.006
0
6mer
202-216
0.005
0
6mer
1070-1082
0.005
0
6mer
1090-1102
0.005
0
XLOC_003854
hsa-miR-375
0.799
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008409
Biotype: transcript isomorph
Gene id: XLOC_003854
Gene Name: XLOC_003854
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1163-1181
0.013
2
7mer
1721-1747
0.009
1
6mer
495-506
0.007
2
6mer
309-333
0.005
0
XLOC_008776
hsa-miR-375
0.799
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017733
Biotype: transcript isomorph
Gene id: XLOC_008776
Gene Name: XLOC_008776
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
857-875
0.017
2
7mer
1415-1441
0.011
3
6mer
665-682
0.003
2
6mer
2304-2326
0.003
1
SLC14A2-AS1
hsa-miR-375
0.799
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585759
Biotype: antisense
Gene id: ENSG00000267097
Gene Name: SLC14A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
185-208
0.033
3
RP11-177B4.2
hsa-miR-375
0.799
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000564513
Biotype: lincRNA
Gene id: ENSG00000260120
Gene Name: RP11-177B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1534-1553
0.018
1
6mer
1720-1738
0.008
1
6mer
1017-1041
0.004
0
7mer
1077-1093
0.003
0
LINC00173
hsa-miR-375
0.799
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000489452
Biotype: lincRNA
Gene id: ENSG00000196668
Gene Name: LINC00173
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
441-460
0.033
5
AP000472.2
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000416327
Biotype: lincRNA
Gene id: ENSG00000233215
Gene Name: AP000472.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.033
2
XLOC_009914
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020597
Biotype: transcript isomorph
Gene id: XLOC_009914
Gene Name: XLOC_009914
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-188
0.023
0
7mer
296-320
0.010
0
AF131217.1
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433310
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5312-5325
0.011
2
6mer
321-348
0.007
6
7mer
5351-5373
0.005
1
6mer
332-353
0.005
0
6mer
327-353
0.003
1
6mer
5596-5618
0.003
1
AC018737.3
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422649
Biotype: lincRNA
Gene id: ENSG00000224655
Gene Name: AC018737.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-69
0.033
4
RP11-826N14.4
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510029
Biotype: lincRNA
Gene id: ENSG00000251623
Gene Name: RP11-826N14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-105
0.033
1
AC159540.1
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594050
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-425
0.019
1
6mer
2-23
0.008
0
6mer
572-593
0.006
0
MIR133A1HG
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581072
Biotype: antisense
Gene id: ENSG00000265142
Gene Name: MIR133A1HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4055-4073
0.023
1
6mer
524-541
0.003
2
6mer
1150-1175
0.003
3
6mer
936-952
0.003
3
DLX2-AS1
hsa-miR-375
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000448117
Biotype: lincRNA
Gene id: ENSG00000236651
Gene Name: DLX2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
660-682
0.020
1
7mer
738-762
0.013
1
ZRANB2-AS2
hsa-miR-375
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000587306
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-315
0.033
0
XLOC_005392
hsa-miR-375
0.797
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4632-4654
0.006
0
7mer
2658-2680
0.005
1
7mer
2965-2982
0.004
1
6mer
262-289
0.004
0
6mer
6819-6843
0.002
1
6mer
1938-1962
0.002
3
6mer
7501-7517
0.002
1
6mer
6982-7005
0.002
2
6mer
3855-3880
0.002
2
6mer
5595-5612
0.001
0
6mer
7946-7970
0.001
0
6mer
1538-1557
0.001
0
6mer
7052-7076
0.001
0
LINC00624
hsa-miR-375
0.796
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621316
Biotype: antisense
Gene id: ENSG00000278811
Gene Name: LINC00624
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3053-3075
0.010
1
7mer
2832-2859
0.009
2
7mer
3188-3210
0.009
1
6mer
2047-2056
0.003
2
6mer
1462-1481
0.001
1
RP11-266K4.13
hsa-miR-375
0.796
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1244-1258
0.017
1
6mer
1348-1357
0.015
1
LINC00879
hsa-miR-375
0.796
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470465
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
212-232
0.022
1
6mer
731-748
0.011
2
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