LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
CTD-2006C1.2
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000406892
Biotype: antisense
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1130-1148
0.019
0
7mer
896-917
0.011
0
6mer
549-570
0.003
0
RP5-998N21.4
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415338
Biotype: lincRNA
Gene id: ENSG00000234571
Gene Name: RP5-998N21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-348
0.016
1
6mer
423-442
0.004
0
6mer
1227-1246
0.004
2
6mer
2752-2779
0.003
1
6mer
750-768
0.003
1
6mer
1155-1173
0.002
2
6mer
1922-1939
0.001
0
RP11-325F22.2
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415513
Biotype: lincRNA
Gene id: ENSG00000237513
Gene Name: RP11-325F22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-167
0.019
0
8mer
48-65
0.014
Not Conserved
RP11-389J22.1
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581987
Biotype: sense_intronic
Gene id: ENSG00000263720
Gene Name: RP11-389J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
659-672
0.025
2
6mer
246-260
0.005
1
6mer
272-292
0.004
1
XLOC_008765
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017944
Biotype: transcript isomorph
Gene id: XLOC_008765
Gene Name: XLOC_008765
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
96-108
0.017
1
8mer
459-478
0.017
Not Conserved
RP11-475A13.2
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561236
Biotype: lincRNA
Gene id: ENSG00000259395
Gene Name: RP11-475A13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1979-2006
0.013
1
6mer
589-614
0.010
1
6mer
1820-1831
0.007
0
6mer
2229-2252
0.004
Not Conserved
AC004862.6
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605580
Biotype: antisense
Gene id: ENSG00000232667
Gene Name: AC004862.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
96-106
0.009
3
6mer
111-126
0.007
1
6mer
102-126
0.007
0
6mer
586-608
0.006
3
6mer
257-273
0.005
3
RP11-266O8.1
hsa-miR-375
0.803
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554105
Biotype: lincRNA
Gene id: ENSG00000257060
Gene Name: RP11-266O8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-220
0.023
6
7mer
212-236
0.010
1
RP11-440L14.1
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503571
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-302
0.034
0
RP11-196H14.3
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536455
Biotype: antisense
Gene id: ENSG00000255629
Gene Name: RP11-196H14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
394-408
0.025
8
6mer
306-329
0.008
7
AC007787.2
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588095
Biotype: antisense
Gene id: ENSG00000267610
Gene Name: AC007787.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31-51
0.034
8
RP11-923I11.3
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000565518
Biotype: lincRNA
Gene id: ENSG00000260122
Gene Name: RP11-923I11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-247
0.020
8
6mer
294-311
0.013
9
CTB-31O20.2
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565797
Biotype: lincRNA
Gene id: ENSG00000261526
Gene Name: CTB-31O20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-389
0.019
1
7mer
718-738
0.015
2
XLOC_005647
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012113
Biotype: transcript isomorph
Gene id: XLOC_005647
Gene Name: XLOC_005647
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1390-1408
0.005
1
6mer
1688-1707
0.005
1
6mer
1375-1397
0.005
1
6mer
1705-1724
0.005
1
6mer
1217-1242
0.004
1
6mer
1055-1078
0.004
1
6mer
1211-1232
0.003
1
6mer
962-973
0.002
0
AP000230.1
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608591
Biotype: lincRNA
Gene id: ENSG00000273492
Gene Name: AP000230.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
550-564
0.034
Not Conserved
RP11-244N9.4
hsa-miR-375
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437864
Biotype: antisense
Gene id: ENSG00000231521
Gene Name: RP11-244N9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-168
0.028
4
6mer
159-183
0.006
1
RP11-251P6.1
hsa-miR-375
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623043
Biotype: lincRNA
Gene id: ENSG00000230768
Gene Name: RP11-251P6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-694
0.026
2
6mer
205-209
0.007
1
RP11-436I24.1
hsa-miR-375
0.801
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_110149.1
Biotype: antisense
Gene id: NR_110149.1 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
876-890
0.017
5
7mer
768-782
0.005
1
6mer
544-566
0.004
0
6mer
892-914
0.004
1
6mer
211-233
0.003
Not Conserved
XLOC_009544
hsa-miR-375
0.800
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019750
Biotype: transcript isomorph
Gene id: XLOC_009544
Gene Name: XLOC_009544
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-120
0.020
1
7mer
1380-1405
0.010
1
6mer
1047-1051
0.003
1
CTD-2501M5.1
hsa-miR-375
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519695
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
678-702
0.021
0
7mer
578-598
0.012
1
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