LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_004983
hsa-miR-375
0.809
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010462
Biotype: transcript isomorph
Gene id: XLOC_004983
Gene Name: XLOC_004983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
337-359
0.018
9
6mer
305-321
0.016
10
AC006196.1
hsa-miR-375
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447194
Biotype: lincRNA
Gene id: ENSG00000230173
Gene Name: AC006196.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-439
0.026
2
6mer
204-230
0.006
1
6mer
1237-1261
0.003
1
XLOC_000625
hsa-miR-375
0.808
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000424
Biotype: transcript isomorph
Gene id: XLOC_000625
Gene Name: XLOC_000625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-107
0.015
1
7mer
3594-3617
0.011
3
6mer
1196-1200
0.003
1
6mer
1204-1208
0.001
1
6mer
1209-1213
0.001
1
6mer
2335-2361
0.001
1
6mer
1206-1218
0.001
Not Conserved
RP11-308N19.1
hsa-miR-375
0.808
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435485
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1539-1557
0.026
0
7mer
1124-1137
0.008
0
RP11-438B23.2
hsa-miR-375
0.807
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1921-1938
0.007
5
7mer
504-516
0.007
0
7mer
5370-5396
0.005
2
6mer
6493-6512
0.004
1
6mer
514-518
0.004
2
6mer
3389-3406
0.002
4
6mer
3926-3944
0.001
Not Conserved
6mer
4870-4896
0.001
1
6mer
5009-5023
0.001
0
CTD-2501M5.1
hsa-miR-375
0.807
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524275
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
659-683
0.020
0
7mer
559-579
0.014
1
LINC00276
hsa-miR-375
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418420
Biotype: lincRNA
Gene id: ENSG00000230448
Gene Name: LINC00276
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
343-366
0.020
1
6mer
971-989
0.003
1
6mer
814-840
0.003
1
6mer
1183-1208
0.002
1
6mer
806-814
0.002
1
6mer
965-989
0.002
1
6mer
792-808
0.001
Not Conserved
RP1-60O19.1
hsa-miR-375
0.806
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602934
Biotype: lincRNA
Gene id: ENSG00000235142
Gene Name: RP1-60O19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-302
0.019
2
7mer
1660-1685
0.011
1
6mer
2015-2036
0.005
2
RP11-356J5.13
hsa-miR-375
0.806
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000595053
Biotype: antisense
Gene id: ENSG00000268472
Gene Name: RP11-356J5.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
86-111
0.023
5
6mer
1107-1125
0.006
0
6mer
1071-1090
0.005
0
XLOC_010097
hsa-miR-375
0.806
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020805
Biotype: transcript isomorph
Gene id: XLOC_010097
Gene Name: XLOC_010097
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1541-1553
0.010
8
6mer
33-56
0.004
0
6mer
472-493
0.004
0
6mer
466-486
0.003
1
6mer
663-688
0.003
1
6mer
633-650
0.003
0
6mer
658-684
0.002
1
6mer
648-660
0.002
Not Conserved
6mer
653-679
0.002
Not Conserved
XLOC_008764
hsa-miR-375
0.806
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018899
Biotype: transcript isomorph
Gene id: XLOC_008764
Gene Name: XLOC_008764
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Liver Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-462
0.019
1
6mer
738-742
0.004
0
6mer
1942-1962
0.004
1
6mer
1220-1241
0.003
1
6mer
717-731
0.002
Not Conserved
6mer
723-736
0.002
Not Conserved
RP11-295G20.2
hsa-miR-375
0.806
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425412
Biotype: antisense
Gene id: ENSG00000233461
Gene Name: RP11-295G20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
305-331
0.034
0
XLOC_007033
hsa-miR-375
0.805
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014513
Biotype: transcript isomorph
Gene id: XLOC_007033
Gene Name: XLOC_007033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4001-4027
0.007
4
6mer
90-116
0.007
1
7mer
504-530
0.006
0
6mer
3350-3377
0.005
7
6mer
1091-1109
0.004
4
6mer
612-636
0.004
1
6mer
3189-3208
0.002
1
CTC-493L21.1
hsa-miR-375
0.805
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506471
Biotype: lincRNA
Gene id: ENSG00000250544
Gene Name: CTC-493L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-673
0.015
Not Conserved
7mer
345-365
0.012
0
7mer
735-745
0.007
0
XLOC_004452
hsa-miR-375
0.805
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009253
Biotype: transcript isomorph
Gene id: XLOC_004452
Gene Name: XLOC_004452
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-673
0.015
Not Conserved
7mer
345-365
0.012
0
7mer
735-745
0.007
0
XLOC_002903
hsa-miR-375
0.804
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006302
Biotype: transcript isomorph
Gene id: XLOC_002903
Gene Name: XLOC_002903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-144
0.034
0
C5orf27
hsa-miR-375
0.804
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000436592
Biotype: lincRNA
Gene id: ENSG00000236882
Gene Name: C5orf27
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-184
0.018
0
7mer
294-316
0.010
0
6mer
1656-1670
0.003
1
6mer
981-1008
0.002
6
RP11-17A1.3
hsa-miR-375
0.804
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499625
Biotype: antisense
Gene id: ENSG00000246225
Gene Name: RP11-17A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1345-1363
0.022
6
7mer
639-651
0.008
1
6mer
808-826
0.004
2
LINC00342
hsa-miR-375
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412393
Biotype: lincRNA
Gene id: ENSG00000232931
Gene Name: LINC00342
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
398-425
0.019
1
6mer
2-23
0.008
0
6mer
572-593
0.007
0
RP11-429B14.1
hsa-miR-375
0.804
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559041
Biotype: sense_overlapping
Gene id: ENSG00000259713
Gene Name: RP11-429B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
357-374
0.019
1
7mer
439-461
0.008
1
6mer
297-304
0.007
1
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