LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
XLOC_010686
hsa-miR-375
0.814
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021683
Biotype: transcript isomorph
Gene id: XLOC_010686
Gene Name: XLOC_010686
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.030
3
6mer
464-484
0.005
3
SOX9-AS1
hsa-miR-375
0.814
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443037
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-41
0.035
6
RP11-638L3.3
hsa-miR-375
0.814
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580659
Biotype: lincRNA
Gene id: ENSG00000265555
Gene Name: RP11-638L3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-305
0.023
0
6mer
79-99
0.006
0
6mer
1326-1341
0.006
2
RP11-66B24.7
hsa-miR-375
0.814
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000431060
Biotype: processed_transcript
Gene id: ENSG00000272808
Gene Name: RP11-66B24.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
861-888
0.020
11
7mer
4006-4021
0.010
6
6mer
2571-2597
0.002
1
6mer
3096-3100
0.002
1
RP11-18H21.1
hsa-miR-375
0.814
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000499452
Biotype: lincRNA
Gene id: ENSG00000245954
Gene Name: RP11-18H21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1203-1223
0.012
1
6mer
1552-1569
0.007
1
6mer
1529-1550
0.006
0
6mer
1525-1543
0.005
Not Conserved
6mer
255-272
0.005
3
XLOC_012093
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025117
Biotype: transcript isomorph
Gene id: XLOC_012093
Gene Name: XLOC_012093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-272
0.012
Not Conserved
7mer
145-167
0.010
0
7mer
379-403
0.009
0
6mer
933-951
0.004
2
RP11-506B6.6
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585450
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-711
0.020
1
7mer
202-221
0.014
0
SYNPR-AS1
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488201
Biotype: antisense
Gene id: ENSG00000241359
Gene Name: SYNPR-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-457
0.035
1
RP11-1152H15.1
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556168
Biotype: lincRNA
Gene id: ENSG00000258807
Gene Name: RP11-1152H15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-48
0.014
0
7mer
182-204
0.011
0
7mer
306-318
0.010
0
LINC01447
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429010
Biotype: lincRNA
Gene id: ENSG00000236078
Gene Name: LINC01447
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2344-2361
0.016
0
7mer
2461-2482
0.011
0
7mer
2643-2665
0.008
0
RP11-206M11.7
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489011
Biotype: antisense
Gene id: ENSG00000244468
Gene Name: RP11-206M11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
500-521
0.020
8
7mer
185-207
0.015
0
PDXDC2P
hsa-miR-375
0.813
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000530079
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-43
0.018
Not Conserved
6mer
7-11
0.007
Not Conserved
6mer
2309-2319
0.005
5
6mer
2-6
0.005
Not Conserved
CTC-459F4.3
hsa-miR-375
0.811
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588122
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-440
0.021
1
7mer
454-473
0.014
0
RP11-553L6.5
hsa-miR-375
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1596-1617
0.016
2
6mer
1466-1481
0.005
1
6mer
543-559
0.005
5
7mer
854-874
0.005
1
6mer
1458-1481
0.004
Not Conserved
LOC442028
hsa-miR-375
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037597.1
Biotype: antisense
Gene id: NR_037597.1 (gene)
Gene Name: LOC442028
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
119-137
0.012
Not Conserved
7mer
3128-3151
0.010
0
6mer
86-108
0.007
0
6mer
54-71
0.006
0
CTC-360G5.9
hsa-miR-375
0.810
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599320
Biotype: lincRNA
Gene id: ENSG00000269486
Gene Name: CTC-360G5.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-622
0.013
Not Conserved
6mer
280-305
0.007
0
7mer
841-865
0.007
Not Conserved
6mer
350-365
0.004
Not Conserved
6mer
2365-2389
0.002
Not Conserved
6mer
1607-1632
0.001
Not Conserved
6mer
1578-1601
0.001
Not Conserved
CTC-205M6.5
hsa-miR-375
0.810
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562870
Biotype: sense_overlapping
Gene id: ENSG00000260841
Gene Name: CTC-205M6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-463
0.027
3
7mer
1232-1258
0.007
0
RP4-778K6.3
hsa-miR-375
0.809
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000476569
Biotype: antisense
Gene id: ENSG00000242154
Gene Name: RP4-778K6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
457-483
0.028
5
6mer
238-262
0.006
1
AC092162.1
hsa-miR-375
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428283
Biotype: retained_intron
Gene id: ENSG00000230552
Gene Name: AC092162.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3375-3392
0.016
7
7mer
1105-1120
0.005
2
6mer
4518-4536
0.005
2
6mer
393-411
0.004
1
6mer
3008-3027
0.003
4
6mer
1574-1600
0.002
2
XLOC_003079
hsa-miR-375
0.809
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006467
Biotype: transcript isomorph
Gene id: XLOC_003079
Gene Name: XLOC_003079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-46
0.027
0
7mer
227-253
0.008
1
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