LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-375


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Gene
miRNA
Score
DIANA Links
AC008277.1
hsa-miR-375
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594921
Biotype: antisense
Gene id: ENSG00000223642
Gene Name: AC008277.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-725
0.020
7
6mer
476-486
0.005
2
6mer
465-492
0.004
3
6mer
475-498
0.003
1
6mer
499-503
0.003
1
RP11-713N11.5
hsa-miR-375
0.818
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000556060
Biotype: lincRNA
Gene id: ENSG00000258879
Gene Name: RP11-713N11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
463-481
0.027
7
6mer
319-344
0.005
2
6mer
190-216
0.004
1
XLOC_011693
hsa-miR-375
0.818
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024250
Biotype: transcript isomorph
Gene id: XLOC_011693
Gene Name: XLOC_011693
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
333-350
0.015
0
6mer
1446-1457
0.012
0
6mer
494-517
0.009
0
CTD-2008L17.2
hsa-miR-375
0.817
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000382897
Biotype: lincRNA
Gene id: ENSG00000206129
Gene Name: CTD-2008L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2339-2364
0.024
0
7mer
1491-1515
0.007
1
6mer
2294-2321
0.004
Not Conserved
RP11-308N19.1
hsa-miR-375
0.817
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425709
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1166-1184
0.027
0
7mer
751-764
0.008
0
RP11-1112C15.2
hsa-miR-375
0.817
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518750
Biotype: lincRNA
Gene id: ENSG00000253523
Gene Name: RP11-1112C15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
799-814
0.019
1
6mer
812-830
0.006
1
6mer
43-64
0.006
1
6mer
306-320
0.004
1
CD27-AS1
hsa-miR-375
0.817
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504270
Biotype: retained_intron
Gene id: ENSG00000215039
Gene Name: CD27-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
22-26
0.007
0
6mer
7-19
0.007
0
6mer
17-21
0.007
0
6mer
12-24
0.007
0
6mer
75-94
0.004
0
6mer
233-256
0.003
0
LINC00680
hsa-miR-375
0.817
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418765
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1341-1363
0.035
2
XLOC_011210
hsa-miR-375
0.816
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023348
Biotype: transcript isomorph
Gene id: XLOC_011210
Gene Name: XLOC_011210
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4575-4597
0.008
3
6mer
352-378
0.006
5
6mer
4379-4391
0.005
1
6mer
4377-4396
0.005
1
6mer
3666-3680
0.004
3
6mer
1803-1826
0.002
1
6mer
811-830
0.002
0
6mer
677-693
0.002
0
6mer
1898-1916
0.001
1
LINC00320
hsa-miR-375
0.816
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000435279
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1101-1126
0.011
Not Conserved
7mer
975-1000
0.009
Not Conserved
6mer
3-22
0.008
1
6mer
1682-1700
0.006
1
6mer
1389-1405
0.001
0
RP11-423H2.5
hsa-miR-375
0.816
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505248
Biotype: antisense
Gene id: ENSG00000249186
Gene Name: RP11-423H2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
54-74
0.032
1
6mer
235-261
0.003
0
LINC00680
hsa-miR-375
0.816
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450081
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1296-1318
0.035
2
RP11-428F8.2
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000425364
Biotype: antisense
Gene id: ENSG00000231046
Gene Name: RP11-428F8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
277-299
0.019
1
7mer
270-295
0.016
0
CTA-342B11.3
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24230-24244
0.004
0
6mer
7735-7748
0.002
1
6mer
3567-3581
0.002
1
6mer
17609-17630
0.002
1
6mer
17218-17230
0.002
1
6mer
9600-9627
0.002
0
6mer
15174-15196
0.002
0
6mer
2655-2679
0.002
2
7mer
17234-17254
0.002
1
6mer
23290-23313
0.002
Not Conserved
6mer
17873-17895
0.002
0
6mer
2088-2105
0.002
0
6mer
12731-12740
0.002
0
6mer
14306-14325
0.002
0
6mer
4970-4997
0.002
1
6mer
8934-8953
0.001
0
6mer
2756-2774
0.001
2
6mer
8132-8151
0.001
1
6mer
7771-7786
0.001
0
AC018737.3
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422238
Biotype: lincRNA
Gene id: ENSG00000224655
Gene Name: AC018737.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-101
0.035
4
ZIC4-AS1
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462168
Biotype: antisense
Gene id: ENSG00000241202
Gene Name: ZIC4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
167-184
0.035
11
XLOC_006794
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014698
Biotype: transcript isomorph
Gene id: XLOC_006794
Gene Name: XLOC_006794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1406-1429
0.010
1
6mer
263-283
0.010
1
6mer
143-169
0.010
1
6mer
349-356
0.006
0
LOC101928882
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_109986.1
Biotype: sense
Gene id: NR_109986.1 (gene)
Gene Name: LOC101928882
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-456
0.031
10
6mer
2784-2810
0.004
0
LINC00320
hsa-miR-375
0.815
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000452561
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1328-1353
0.013
Not Conserved
7mer
1082-1107
0.012
Not Conserved
6mer
3-22
0.008
1
6mer
1616-1632
0.002
0
RP11-474P2.2
hsa-miR-375
0.814
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550319
Biotype: antisense
Gene id: ENSG00000258096
Gene Name: RP11-474P2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-375
Sequence: uuuguucguucggcucgcguga
MirBase ID: MIMAT0000728
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-105
0.035
9
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